CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d030251_P001	Maize	cytosol	76.72	85.36
EER92576	Sorghum	mitochondrion	43.12	46.92
KXG19704	Sorghum	mitochondrion	41.09	44.23
GSMUA_Achr11P...	Banana	mitochondrion	36.44	42.35
GSMUA_Achr7P18640_001	Banana	mitochondrion	32.39	42.22
GSMUA_Achr10P...	Banana	cytosol	31.58	41.49
GSMUA_Achr6P11310_001	Banana	cytosol	31.78	41.32
EES05563	Sorghum	mitochondrion	38.26	40.91
GSMUA_Achr6P02470_001	Banana	mitochondrion	31.38	40.79
GSMUA_Achr3P02030_001	Banana	plastid	33.6	39.62
VIT_01s0011g06140.t01	Wine grape	mitochondrion	34.01	38.01
PGSC0003DMT400058621	Potato	cytosol, mitochondrion	31.78	34.81
AT5G37490.1	Thale cress	cytosol, nucleus, peroxisome	30.36	34.48
KRH72959	Soybean	cytosol, mitochondrion	30.57	34.47
KRG97963	Soybean	mitochondrion	29.96	34.34
KRH30918	Soybean	mitochondrion	29.96	34.02
Solyc01g005160.2.1	Tomato	mitochondrion	30.97	34.0
KRH48691	Soybean	cytosol	29.76	33.64
KRH17309	Soybean	cytosol, mitochondrion	29.76	33.49
CDY50319	Canola	cytosol	28.54	33.02
CDY16432	Canola	cytosol	28.54	32.94
Bra039752.1-P	Field mustard	cytosol	28.14	32.94
CDY27655	Canola	mitochondrion	29.15	32.88
KRH39018	Soybean	mitochondrion	29.15	32.88
Bra025442.1-P	Field mustard	mitochondrion	29.15	32.88
CDX99694	Canola	mitochondrion	28.95	32.65
Solyc04g008100.1.1	Tomato	cytosol	28.95	32.35
PGSC0003DMT400073836	Potato	cytosol	27.13	31.98
PGSC0003DMT400075778	Potato	mitochondrion	28.54	31.9
EES06938	Sorghum	extracellular	25.71	31.2
Solyc11g006030.1.1	Tomato	cytosol	26.92	30.93
EES03937	Sorghum	plastid	25.3	30.64
AT1G66160.1	Thale cress	cytosol	26.72	30.63
AT3G02840.1	Thale cress	mitochondrion	22.87	29.82
CDX74232	Canola	cytosol, extracellular, mitochondrion, plastid	22.06	29.62
CDX92016	Canola	mitochondrion	21.86	29.35
Bra001067.1-P	Field mustard	mitochondrion	21.66	29.08
Bra040605.1-P	Field mustard	mitochondrion	21.86	28.8
CDY51529	Canola	mitochondrion	21.66	28.53
CDY28714	Canola	mitochondrion	21.66	28.53
EES13136	Sorghum	cytosol	24.09	27.93
EES11341	Sorghum	cytosol	23.28	27.91
OQU85086	Sorghum	cytosol	23.48	27.17
EES06927	Sorghum	cytosol	23.08	26.89
OQU81614	Sorghum	cytosol	21.46	26.63
EES07426	Sorghum	cytosol	22.06	25.41
EER95229	Sorghum	cytosol	23.08	24.84
EES05205	Sorghum	cytosol	22.47	24.5
KXG22102	Sorghum	mitochondrion	21.46	23.19
KXG23010	Sorghum	cytosol	21.05	22.91
KXG26241	Sorghum	cytosol	21.26	22.73
OQU81548	Sorghum	mitochondrion	20.04	22.15
OQU80253	Sorghum	mitochondrion	9.31	21.1
OQU81292	Sorghum	mitochondrion	8.7	20.0

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A1B6QLD1	InterPro:ARM-like	InterPro:ARM-type_fold
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613
InterPro:IPR011989	InterPro:IPR013083	EnsemblPlants:KXG38738	ProteinID:KXG38738	ProteinID:KXG38738.1	PFAM:PF04564
PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF16	SMART:SM00504	EnsemblPlantsGene:SORBI_3001G272900	SUPFAM:SSF48371
SUPFAM:SSF57850	UniParc:UPI00081ACFCC	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:-:52754506..52755990

Molecular Weight (calculated)

51913.4 Da

IEP (calculated)

5.961

GRAVY (calculated)

0.144

Length

494 amino acids

Sequence
(BLAST)

001: MASITKVLHC SIPRNAHPLT IQSPPWPSMS SQQQLWTAPA KEEAPPPPPP PPPEFLCPIT LDLMQDPVAA PTGITYDRAA IETWLFSGGQ RTCPVTHGDL
101: SAGDFVPNHT LRRLIQDWYA TNRCCSSVDR VPATPEEAAV AELEGATRAG DAERCAAAAR GVRRLAWRAA EQNRRRGLES AGAARALAAA FTFFAATADD
201: AAAATDDVLD VVLAALVLVM PMDEAAILAV GSSSASVARL VAVAANGDLH RRLQAVVVIR EIISLSAYRD TTTDLSANAE AIAEVLVKTI RDGICQPATR
301: ACLVTAYHLA CTGGESAAAR LAAAGVVTVL VELLVDADRS TAEKALAALD AALAASGDGR ARARADALAM PVLVKKMFCV SDAATALVVS VLLRICKKCP
401: GDGEECPGDC ASASARNARE TAMAARRHAI VEALQLGALQ KVLLLLQVGC SGETKENAAE LLRLMVRYQG REECCVDAMD LRGIKRDTTA ILTG

Best Arabidopsis Sequence Match ( AT5G37490.1 )
(BLAST)

001: MGFLWRTRSN EKKITPVLSW PESEPESEIT IPPEFQCPIS IDLMKDPVII STGITYDRVS IETWINSGNK TCPVTNTVLT TFDQIPNHTI RKMIQGWCVE
101: KGSPLIQRIP TPRVPLMPCE VYEISRKLSS ATRRGDYEKC GVIIEKIKKL GDESEKNRKC VNENSVGWVL CDCFDKFSGD EKLTFMLNEI LSLLTWMFPI
201: GLEGISKLAS ATSFRCVAGL LKSTDDSVRQ NAAFIMKEIL SLDETRVHSF AVENGVAEAL VKLIRDSVSS SSTKSSLIAI YQMVLQKPEI ASEFLEIGLV
301: SITVEMIVDA ENSVCEKALA VLDAICETEH GREEVRKNAL VMPLLVKKIA KVSELATRSS MSMILKLWKT GNTVAVEDAV RLGAFQKVLL VLQVGYGEET
401: KEKATELLKM MNTQMKLMSD CVDSLKEFKY IKKPF

Arabidopsis Description

PUB21U-box domain-containing protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q5PNY6]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.