CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017976_P001	Maize	mitochondrion	88.1	90.04
TraesCS6B01G342800.1	Wheat	mitochondrion	73.38	74.67
TraesCS6A01G312600.1	Wheat	mitochondrion	72.94	74.07
TraesCS6D01G292200.1	Wheat	mitochondrion	72.29	73.57
Os02t0738200-01	Rice	mitochondrion	71.21	72.15
HORVU6Hr1G077120.1	Barley	plastid	73.16	66.02
KXG19704	Sorghum	mitochondrion	63.64	64.05
GSMUA_Achr7P18640_001	Banana	mitochondrion	42.86	52.24
GSMUA_Achr6P02470_001	Banana	mitochondrion	42.42	51.58
GSMUA_Achr10P...	Banana	cytosol	41.13	50.53
GSMUA_Achr6P11310_001	Banana	cytosol	41.56	50.53
EER92576	Sorghum	mitochondrion	47.19	48.02
GSMUA_Achr11P...	Banana	mitochondrion	44.16	48.0
VIT_01s0011g06140.t01	Wine grape	mitochondrion	44.81	46.83
GSMUA_Achr3P02030_001	Banana	plastid	41.13	45.35
KRH48691	Soybean	cytosol	42.21	44.62
KRH39018	Soybean	mitochondrion	41.34	43.61
PGSC0003DMT400058621	Potato	cytosol, mitochondrion	41.56	42.57
KRH72959	Soybean	cytosol, mitochondrion	40.26	42.47
KRH17309	Soybean	cytosol, mitochondrion	40.04	42.14
Solyc01g005160.2.1	Tomato	mitochondrion	40.91	42.0
Solyc04g008100.1.1	Tomato	cytosol	39.83	41.63
KRG97963	Soybean	mitochondrion	38.31	41.07
KRH30918	Soybean	mitochondrion	38.53	40.92
PGSC0003DMT400075778	Potato	mitochondrion	38.74	40.5
PGSC0003DMT400073836	Potato	cytosol	35.06	38.66
KXG38738	Sorghum	plastid	40.91	38.26
Solyc11g006030.1.1	Tomato	cytosol	35.5	38.14
AT5G37490.1	Thale cress	cytosol, nucleus, peroxisome	35.06	37.24
Bra025442.1-P	Field mustard	mitochondrion	34.63	36.53
Bra039752.1-P	Field mustard	cytosol	33.33	36.49
CDY27655	Canola	mitochondrion	34.2	36.07
CDY16432	Canola	cytosol	33.33	35.98
CDX99694	Canola	mitochondrion	33.98	35.84
CDY50319	Canola	cytosol	33.12	35.83
AT1G66160.1	Thale cress	cytosol	32.47	34.8
AT3G02840.1	Thale cress	mitochondrion	27.92	34.04
Bra001067.1-P	Field mustard	mitochondrion	27.06	33.97
CDX74232	Canola	cytosol, extracellular, mitochondrion, plastid	26.62	33.42
CDX92016	Canola	mitochondrion	26.62	33.42
EES06938	Sorghum	extracellular	29.22	33.17
EES13136	Sorghum	cytosol	29.65	32.16
EES03937	Sorghum	plastid	28.36	32.11
OQU85086	Sorghum	cytosol	29.65	32.08
EES06927	Sorghum	cytosol	29.44	32.08
CDY28714	Canola	mitochondrion	25.97	32.0
Bra040605.1-P	Field mustard	mitochondrion	25.76	31.73
CDY51529	Canola	mitochondrion	25.76	31.73
OQU81614	Sorghum	cytosol	24.89	28.89
EES11341	Sorghum	cytosol	25.32	28.4
KXG26241	Sorghum	cytosol	27.27	27.27
EES07426	Sorghum	cytosol	25.11	27.04
EES05205	Sorghum	cytosol	25.76	26.27
OQU80253	Sorghum	mitochondrion	12.12	25.69
EER95229	Sorghum	cytosol	24.89	25.05
OQU81548	Sorghum	mitochondrion	23.38	24.16
OQU81292	Sorghum	mitochondrion	11.04	23.72
KXG23010	Sorghum	cytosol	22.08	22.47
KXG22102	Sorghum	mitochondrion	21.64	21.88

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:8068609	InterPro:ARM-like	InterPro:ARM-type_fold
UniProt:C5XZ87	EnsemblPlants:EES05563	ProteinID:EES05563	ProteinID:EES05563.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF107	SMART:SM00504	EnsemblPlantsGene:SORBI_3004G245100
SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0001A853C8	InterPro:Ubox_domain	RefSeq:XP_002452587.1	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:59301645..59303033

Molecular Weight (calculated)

48913.5 Da

IEP (calculated)

8.358

GRAVY (calculated)

0.167

Length

462 amino acids

Sequence
(BLAST)

001: MVTPVSRYRL RPRSVRVAVS EIPLATRRTR QPPQLVPGAA AAVATEPAIP SNFLCPISLE MMRDPVTAPT GITYDRDSVE GWLERGHSTC PVTARPLRAE
101: DLIPNHATRR MIQEWCVANR ALGVERVPTP RVPLSAAAAA DLLAAVSAAA RRGDAPACRQ LAARARALGK ESDRNRRCLA AAGAARALSS AFSQLVGQPA
201: LASLLTALGG ALDEILAALV VFFPLGEESR SHIASPASLN AVVSILSHGE TTAKAGAAVV LREIASSSDP ECLDAMSETD GIHDALIKLL QRPVSAQATK
301: AAMVTAYYLV TNSGLAASRL VDLGMVELLV ELLVDADKGT TEKALAVLDS LLLTEEGRGK ACAHALAVPV LVKKMQHVSD MATEFAVSAL WRLCKSFSGE
401: GPCKAEALQL GAFQKLLLLL QVGCMGVTKE RASELLRLLN ASRDGVECIE TVDFKGLKRP FS

Best Arabidopsis Sequence Match ( AT1G66160.1 )
(BLAST)

001: MGLSLRVRRR GGSVSKKEII PVTSCSEEVE ITIPSQFQCP ISYELMKDPV IIASGITYDR ENIEKWFESG YQTCPVTNTV LTSLEQIPNH TIRRMIQGWC
101: GSSLGGGIER IPTPRVPVTS HQVSEICERL SAATRRGDYA ACMEMVTKMT RLGKESERNR KCVKENGAGL VLCVCFDAFS ENANASLLLE ETVSVLTWML
201: PIGLEGQSKL TTTSSFNRLV ELLRNGDQNA AFLIKELLEL NVTHVHALTK INGVQEAFMK SINRDSTCVN SLISIHHMIL TNQETVSRFL ELDLVNITVE
301: MLVDSENSVC EKALTVLNVI CETKEGREKV RRNKLVIPIL VKKILKISEK KDLVSVMWKV CKSGDGSEVE EALRLGAFKK LVVMLQVGCG EGTKEKVTEL
401: LKMMNKVMKM NGFVDRSYSS SIEFKHVKKP F

Arabidopsis Description

PUB20U-box domain-containing protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8D1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.