Factsheet for GSMUA_Achr7P18640_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 5
plastid 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P02470_001	Banana	mitochondrion	67.28	67.11
GSMUA_Achr6P11310_001	Banana	cytosol	54.88	54.74
GSMUA_Achr10P...	Banana	cytosol	53.3	53.72
GSMUA_Achr11P...	Banana	mitochondrion	57.26	51.06
GSMUA_Achr3P02030_001	Banana	plastid	55.67	50.36
TraesCS7D01G201600.1	Wheat	mitochondrion	53.3	45.7
TraesCS7B01G105600.1	Wheat	mitochondrion	53.3	45.29
VIT_01s0011g06140.t01	Wine grape	mitochondrion	52.77	45.25
Zm00001d044734_P001	Maize	mitochondrion	52.24	44.8
KXG19704	Sorghum	mitochondrion	53.03	43.79
TraesCS4B01G228700.1	Wheat	mitochondrion	50.4	43.41
Os06t0248500-00	Rice	mitochondrion	51.72	43.27
Zm00001d017976_P001	Maize	mitochondrion	51.45	43.14
TraesCS4D01G229900.1	Wheat	mitochondrion	49.87	42.95
EES05563	Sorghum	mitochondrion	52.24	42.86
HORVU4Hr1G064070.1	Barley	mitochondrion	49.6	42.73
TraesCS6A01G312600.1	Wheat	mitochondrion	51.19	42.64
TraesCS6B01G342800.1	Wheat	mitochondrion	50.92	42.51
TraesCS6D01G292200.1	Wheat	mitochondrion	50.92	42.51
Os03t0240600-01	Rice	plastid	49.87	42.47
Zm00001d028374_P001	Maize	mitochondrion	49.87	42.28
EER92576	Sorghum	mitochondrion	50.4	42.07
Os02t0738200-01	Rice	mitochondrion	50.4	41.89
HORVU7Hr1G040790.2	Barley	plastid	53.3	41.39
PGSC0003DMT400058621	Potato	cytosol, mitochondrion	48.28	40.58
KRH30918	Soybean	mitochondrion	45.91	40.0
Solyc01g005160.2.1	Tomato	mitochondrion	47.49	40.0
KRH39018	Soybean	mitochondrion	45.91	39.73
KRG97963	Soybean	mitochondrion	45.12	39.68
KRH48691	Soybean	cytosol	45.38	39.36
Solyc04g008100.1.1	Tomato	cytosol	45.38	38.91
KRH72959	Soybean	cytosol, mitochondrion	44.59	38.58
KRH17309	Soybean	cytosol, mitochondrion	44.59	38.5
PGSC0003DMT400075778	Potato	mitochondrion	44.85	38.46
HORVU6Hr1G077120.1	Barley	plastid	50.66	37.5
Zm00001d030251_P001	Maize	cytosol	42.48	36.26
PGSC0003DMT400073836	Potato	cytosol	39.05	35.32
Solyc11g006030.1.1	Tomato	cytosol	39.05	34.42
GSMUA_Achr7P03220_001	Banana	cytosol	27.97	34.19
AT5G37490.1	Thale cress	cytosol, nucleus, peroxisome	37.99	33.1
CDY50319	Canola	cytosol	37.2	33.02
CDY16432	Canola	cytosol	37.2	32.94
Bra039752.1-P	Field mustard	cytosol	36.68	32.94
CDY27655	Canola	mitochondrion	37.99	32.88
Bra025442.1-P	Field mustard	mitochondrion	37.47	32.42
KXG38738	Sorghum	plastid	42.22	32.39
CDX99694	Canola	mitochondrion	37.2	32.19
TraesCS5A01G088600.1	Wheat	cytosol	29.02	32.16
GSMUA_Achr5P01000_001	Banana	cytosol	29.82	31.83
GSMUA_Achr9P08750_001	Banana	cytosol, plasma membrane, plastid	28.23	31.01
AT1G66160.1	Thale cress	cytosol	34.83	30.63
GSMUA_Achr10P...	Banana	cytosol	28.76	29.86
GSMUA_Achr8P30420_001	Banana	mitochondrion	21.11	29.3
GSMUA_Achr8P30400_001	Banana	cytosol	28.23	29.16
GSMUA_Achr11P...	Banana	cytosol	27.7	28.15
GSMUA_Achr1P13220_001	Banana	cytosol	29.02	27.78
CDX92016	Canola	mitochondrion	26.91	27.72
AT3G02840.1	Thale cress	mitochondrion	27.44	27.44
CDX74232	Canola	cytosol, extracellular, mitochondrion, plastid	26.39	27.17
GSMUA_Achr6P25670_001	Banana	cytosol	30.61	27.1
CDY28714	Canola	mitochondrion	26.65	26.93
Bra001067.1-P	Field mustard	mitochondrion	25.86	26.63
GSMUA_Achr3P18060_001	Banana	cytosol	26.65	26.51
GSMUA_Achr11P...	Banana	cytosol	25.59	26.5
Bra040605.1-P	Field mustard	mitochondrion	26.12	26.4
CDY51529	Canola	mitochondrion	26.12	26.4
GSMUA_Achr7P23310_001	Banana	cytosol, peroxisome, plastid	27.44	26.13
GSMUA_Achr6P18140_001	Banana	cytosol	27.44	25.43
GSMUA_Achr2P20690_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	26.39	24.94
GSMUA_Achr10P...	Banana	plastid	24.54	24.22
GSMUA_Achr5P01020_001	Banana	cytosol	25.33	23.94
GSMUA_Achr1P16250_001	Banana	cytosol	24.01	22.36
GSMUA_Achr8P04940_001	Banana	cytosol	25.33	22.22
GSMUA_Achr2P08620_001	Banana	cytosol	25.33	22.12
GSMUA_Achr3P25750_001	Banana	cytosol	24.8	21.91
GSMUA_Achr4P07400_001	Banana	cytosol	24.27	21.2
GSMUA_Achr5P13860_001	Banana	cytosol	16.62	20.79
GSMUA_Achr9P29630_001	Banana	cytosol	29.29	17.96

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr7G18640_001	EnsemblPlants:GSMUA_Achr7P18640_001
EnsemblPlants:GSMUA_Achr7T18640_001	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M0TIQ1	PFAM:PF04564
PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF107	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI000295F745	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

Putative U-box domain-containing protein 21 [Source:GMGC_GENE;Acc:GSMUA_Achr7G18640_001]

Coordinates

chr7:+:21413794..21415228

Molecular Weight (calculated)

41343.6 Da

IEP (calculated)

6.751

GRAVY (calculated)

0.080

Length

379 amino acids

Sequence
(BLAST)

001: MASVTARMSS SRIPSVKRIP IANSMAEKLI PAAFRCPISL DLMKDPVTLH TGITYDRRSI EAWLELGNLT CPVTKQALEN EDLVPNHSIR RMIQDWCVSD
101: LLSEISVACR RGDNARELAA ESLENPRAGV MDEILAALAA FLPLDEGSYL QLASPKPLDS IVSVLKSADL EGRLNAALVL KELASSSPPD RIEVVARTDG
201: LIEALVKLIE KPISPRATNA SMVTAFYLVA SSERIAARFV EMGIVSLLLE ILVDSEKSMC EKALGVLDGV LSCSRGREMA SAHSLAVPVL VKKTSRVADM
301: ETEFAVSALW KLCKNDDEGE RVVEALQAGA FQKLLLLLQV GCKGTTKEKV SDLLKLLNRK KRSSECIETV DLRGLKRSF

Best Arabidopsis Sequence Match ( AT1G66160.1 )
(BLAST)

001: MGLSLRVRRR GGSVSKKEII PVTSCSEEVE ITIPSQFQCP ISYELMKDPV IIASGITYDR ENIEKWFESG YQTCPVTNTV LTSLEQIPNH TIRRMIQGWC
101: GSSLGGGIER IPTPRVPVTS HQVSEICERL SAATRRGDYA ACMEMVTKMT RLGKESERNR KCVKENGAGL VLCVCFDAFS ENANASLLLE ETVSVLTWML
201: PIGLEGQSKL TTTSSFNRLV ELLRNGDQNA AFLIKELLEL NVTHVHALTK INGVQEAFMK SINRDSTCVN SLISIHHMIL TNQETVSRFL ELDLVNITVE
301: MLVDSENSVC EKALTVLNVI CETKEGREKV RRNKLVIPIL VKKILKISEK KDLVSVMWKV CKSGDGSEVE EALRLGAFKK LVVMLQVGCG EGTKEKVTEL
401: LKMMNKVMKM NGFVDRSYSS SIEFKHVKKP F

Arabidopsis Description

PUB20U-box domain-containing protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8D1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.