Factsheet for GSMUA_Achr1P13220_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P08750_001	Banana	cytosol, plasma membrane, plastid	71.72	82.32
GSMUA_Achr6P25670_001	Banana	cytosol	75.51	69.86
EES06938	Sorghum	extracellular	66.67	64.86
Zm00001d016764_P001	Maize	extracellular	66.92	63.4
Os02t0548700-00	Rice	cytosol, extracellular, plastid	65.91	62.59
TraesCS6B01G268300.1	Wheat	extracellular	63.89	62.16
Zm00001d050712_P001	Maize	extracellular, plastid	64.14	62.1
TraesCS6A01G256700.1	Wheat	extracellular	63.38	61.67
TraesCS6D01G237900.1	Wheat	extracellular	63.13	61.43
PGSC0003DMT400066588	Potato	cytosol	53.79	51.33
Solyc01g107980.2.1	Tomato	cytosol	53.54	51.08
VIT_03s0063g00180.t01	Wine grape	cytosol	53.03	50.6
KRH70657	Soybean	cytosol	52.78	50.36
KRH50316	Soybean	cytosol, plasma membrane, plastid	52.53	50.24
Bra038205.1-P	Field mustard	cytosol	51.26	48.68
CDX99233	Canola	cytosol, peroxisome, plastid	51.52	48.46
CDY50158	Canola	cytosol	51.01	48.44
CDX95458	Canola	cytosol	51.01	48.44
CDX92328	Canola	cytosol	51.01	47.75
Bra022415.1-P	Field mustard	cytosol	50.76	47.63
Bra022417.1-P	Field mustard	cytosol	50.76	47.63
CDY16513	Canola	cytosol	50.25	47.04
Bra014206.1-P	Field mustard	cytosol	50.25	47.04
AT3G19380.1	Thale cress	cytosol, golgi, plastid	50.0	47.03
CDY59286	Canola	cytosol	50.0	46.81
AT1G49780.1	Thale cress	cytoskeleton, cytosol, vacuole	49.75	46.79
GSMUA_Achr6P02470_001	Banana	mitochondrion	29.55	30.79
GSMUA_Achr8P30420_001	Banana	mitochondrion	21.21	30.77
GSMUA_Achr7P03220_001	Banana	cytosol	23.99	30.65
GSMUA_Achr10P...	Banana	cytosol	28.79	30.32
GSMUA_Achr6P11310_001	Banana	cytosol	28.79	30.0
GSMUA_Achr10P...	Banana	cytosol	27.02	29.32
GSMUA_Achr7P18640_001	Banana	mitochondrion	27.78	29.02
GSMUA_Achr11P...	Banana	mitochondrion	31.06	28.94
GSMUA_Achr8P30400_001	Banana	cytosol	26.52	28.61
GSMUA_Achr5P01020_001	Banana	cytosol	28.54	28.18
GSMUA_Achr11P...	Banana	cytosol	25.76	27.87
GSMUA_Achr5P01000_001	Banana	cytosol	24.75	27.61
GSMUA_Achr3P02030_001	Banana	plastid	29.04	27.45
GSMUA_Achr2P20690_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	27.53	27.18
GSMUA_Achr11P...	Banana	cytosol	25.25	26.81
GSMUA_Achr7P23310_001	Banana	cytosol, peroxisome, plastid	26.77	26.63
GSMUA_Achr6P18140_001	Banana	cytosol	27.27	26.41
GSMUA_Achr1P16250_001	Banana	cytosol	25.25	24.57
GSMUA_Achr10P...	Banana	plastid	23.48	24.22
GSMUA_Achr3P18060_001	Banana	cytosol	21.97	22.83
GSMUA_Achr4P07400_001	Banana	cytosol	24.49	22.35
GSMUA_Achr3P25750_001	Banana	cytosol	23.99	22.14
GSMUA_Achr2P08620_001	Banana	cytosol	24.24	22.12
GSMUA_Achr5P13860_001	Banana	cytosol	16.92	22.11
GSMUA_Achr8P04940_001	Banana	cytosol	23.48	21.53
GSMUA_Achr9P29630_001	Banana	cytosol	28.03	17.96

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr1G13220_001	EnsemblPlants:GSMUA_Achr1P13220_001	EnsemblPlants:GSMUA_Achr1T13220_001	InterPro:IPR003613
InterPro:IPR011989	InterPro:IPR013083	UniProt:M0RZI0	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849
PANTHER:PTHR22849:SF56	SMART:SM00504	SUPFAM:SSF57850	UniParc:UPI0002959931	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

Putative U-box domain-containing protein 26 [Source:GMGC_GENE;Acc:GSMUA_Achr1G13220_001]

Coordinates

chr1:+:10096902..10098167

Molecular Weight (calculated)

41128.5 Da

IEP (calculated)

7.789

GRAVY (calculated)

0.145

Length

396 amino acids

Sequence
(BLAST)

001: MPGSVAPLDL AGVTIPHHFR CPISLELMRD PVTVCTGQTY DRESIESWVA TGSTTCPVTR ARLADFTLIP NHTLRRLIQD WCVAHRSLGV ERIPTPKQPA
101: DAALIRSLVA AARSQGGAAA SRTRSALVEI AFEGEESGCP DADQPAMDAM AVLSMLSMTE AESAGVAARP ERLRRLGEVV RGHPSTEARI NAATVIEAVA
201: AGARSAETRA AVGGTEGVME GLVELVAQRG NGRAGRVGIR GLFALCLAKE NRGRALAAGA AAAVVGRVAE LASSDVERAL ATVELLCRED GGRDAVVAGW
301: GGGAVAVAAL VRVMAGKASG RAAEHAAAVL VAVLGGSEAL HAEAVAAGVV AHLLLMVQGG CSERAKRKAQ LLLKLFRSAW PRHDTISNSD DFLQPF

Best Arabidopsis Sequence Match ( AT1G49780.1 )
(BLAST)

001: MPGNLEPLDL GIQIPYHFRC PISLDLMSDP VTISTGQTYD RTSIDSWIAM GNTTCPVTRV ALSDFTLIPN HTLRRLIQEW CVANRSNGVE RIPTPKQPAD
101: PISVRSLLSQ ASAITGTHVS VRSRAAAIRR LRGLARDSEK NRVLIAGHNA REILVRILFA DIETTSLSSE LVSESLALLV LLHMTETECE AVASDPSRVG
201: FMTRLLFDSS IEIRVNAAAL IEMVLTGAKS MDLKLIISGS DSIFEGVLDL LKNPISSRRA LKIGIKAIFA LCLVKQTRHL AISAGAPGIL IDRLAADFDR
301: CDTERGLATV ELLCRLPEGC AAFGEHALTV PLMVKTILRV SDRATEYAAG ALLALCTAEE RCRDEAAAAG LVTQLLLLVQ SDCTERAKRK AQMLLKLLRD
401: SWPDDSTVHS DDFNRSEVAP F

Arabidopsis Description

PUB26U-box domain-containing protein 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA4]
SUBAcon: [cytoskeleton,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.