Factsheet for Bra022415.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra022417.1-P	Field mustard	cytosol	100.0	100.0
CDX92328	Canola	cytosol	97.87	97.64
CDX99233	Canola	cytosol, peroxisome, plastid	94.55	94.77
Bra038205.1-P	Field mustard	cytosol	89.81	90.89
AT3G19380.1	Thale cress	cytosol, golgi, plastid	86.73	86.94
Bra014206.1-P	Field mustard	cytosol	79.86	79.67
KRH50316	Soybean	cytosol, plasma membrane, plastid	67.06	68.36
Solyc01g107980.2.1	Tomato	cytosol	67.06	68.19
KRH70657	Soybean	cytosol	66.35	67.47
PGSC0003DMT400066588	Potato	cytosol	65.88	66.99
VIT_03s0063g00180.t01	Wine grape	cytosol	65.64	66.75
GSMUA_Achr9P08750_001	Banana	cytosol, plasma membrane, plastid	44.31	54.2
EES06938	Sorghum	extracellular	49.29	51.11
TraesCS6D01G237900.1	Wheat	extracellular	49.05	50.86
TraesCS6A01G256700.1	Wheat	extracellular	49.05	50.86
TraesCS6B01G268300.1	Wheat	extracellular	49.05	50.86
Zm00001d050712_P001	Maize	extracellular, plastid	49.29	50.86
GSMUA_Achr1P13220_001	Banana	cytosol	47.63	50.76
Os02t0548700-00	Rice	cytosol, extracellular, plastid	50.0	50.6
Zm00001d016764_P001	Maize	extracellular	48.82	49.28
GSMUA_Achr6P25670_001	Banana	cytosol	48.82	48.13
Bra023044.1-P	Field mustard	cytosol	29.62	30.56
Bra005309.1-P	Field mustard	cytosol	27.96	30.49
Bra017278.1-P	Field mustard	cytosol	29.38	30.1
Bra012803.1-P	Field mustard	cytosol	29.86	29.79
Bra033430.1-P	Field mustard	cytosol	29.86	29.72
Bra006925.1-P	Field mustard	cytosol	30.33	29.43
Bra025442.1-P	Field mustard	mitochondrion	29.38	28.31
Bra029975.1-P	Field mustard	cytosol	27.49	26.19
Bra037833.1-P	Field mustard	cytosol	26.3	25.06
Bra039752.1-P	Field mustard	cytosol	24.88	24.88
Bra001717.1-P	Field mustard	cytosol	24.88	24.76
Bra024318.1-P	Field mustard	cytosol	24.41	24.58
Bra022347.1-P	Field mustard	cytosol	24.64	24.53
Bra038683.1-P	Field mustard	cytosol	25.83	24.38
Bra034806.1-P	Field mustard	cytosol	26.3	23.77
Bra037568.1-P	Field mustard	cytosol	23.22	23.73
Bra001424.1-P	Field mustard	cytosol	25.83	23.29
Bra001067.1-P	Field mustard	mitochondrion	19.43	22.28
Bra040605.1-P	Field mustard	mitochondrion	19.67	22.13

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	EnsemblPlantsGene:Bra022415
EnsemblPlants:Bra022415.1	EnsemblPlants:Bra022415.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M4E0W8	PFAM:PF04564
PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF56	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI0002547E9A	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

AT3G19380 (E=8e-179) PUB25 | PUB25 (PLANT U-BOX 25); binding / ubiquitin-protein ligase

Coordinates

chrA05:+:17853392..17854660

Molecular Weight (calculated)

46150.0 Da

IEP (calculated)

7.771

GRAVY (calculated)

0.080

Length

422 amino acids

Sequence
(BLAST)

001: MPRSLEPLDL GLQIPYHFRC PISLELMRDP VTVCTGQTYD RTSIESWVST GNNNTTCPVT RAPLSDHTLI PNHTLRRLIQ EWCVANRSNG VERIPTPKQP
101: ADPTSVRALL SQASAACGTH VSVRSRAAAL RRLRAFARDS EKNRVLIAAH NAKEILIRIL FSDVAPELVS ESLALLVIFP MTEPDQCVSI ISDPGRVGFL
201: TRLLFDSSIE TRVNAAALIE MVVTGTKAAD IKGTVLTSEC IFEGVIDLLR NPTVTSSPRR ALKIGVKALF ALCLVKNTRH LAVSSGAPEI LIDRLAAGLD
301: RCDTERALAT VELLCRTPEG CAAFGEHALT VPLLVKTILR VSDRATEYAA GALLALCTAE ERWREEAVAA GVVVQLLLMV QSECTERAKR KGQKLLKLLR
401: DSWPDYSFAN SDDFGCSEVV PF

Best Arabidopsis Sequence Match ( AT3G19380.1 )
(BLAST)

001: MPRNIEPLDL GIQIPYHFRC PISLELMQDP VTVCTGQTYD RASIESWVSI GNNTTCPVTR APLSDFTLIP NHTLRRLIQE WCVANRSNGV ERIPTPKQPA
101: DPTSVRALLS QASAITGTHV SVRSRAAALR RLRGFARDSD KNRVLIAAHN ATEILIKILF SETTSSELVS ESLALLVMLP ITEPNQFVSI SSDPGRVEFL
201: TRLLFDSSIE TRVNAAALIE IVSTGTKSAD LKGSISNSES VFEGVLDLLR NPISSRRALK IGIKTLFALC SVKSTRHIAI TAGAPEILID RLAADFDRCD
301: TERALATVEL LCRTPEGCAA FGEHALTVPL LVKTILRVSD RATEYAAGAL LALCTAEERW REEAAGAGVV VQLLLMVQSE CTERAKKKAQ KLLKLLRDSW
401: PDYNSFANSD DFGCSSQVVP F

Arabidopsis Description

PUB25U-box domain-containing protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT79]
SUBAcon: [golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.