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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, secretory
BaCelLo:nucleus
iPSORT:secretory
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra015543.1-P golgi
Bra022506.1-P
Bra037951.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G52450.1 Bra015543.1-P AT1G07000.1 23170036
AT3G52450.1 Bra015543.1-P AT1G07000.1 23170036
AT3G52450.1 Bra022506.1-P AT5G49830.2 23170036
AT3G52450.1 Bra037951.1-P AT5G49830.2 23170036
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY23218 Canola cytosol 93.16 99.75
Bra006925.1-P Field mustard cytosol 90.33 88.05
Bra012803.1-P Field mustard cytosol 87.74 87.94
AT3G52450.1 Thale cress cytosol 88.92 86.67
Bra023044.1-P Field mustard cytosol 76.18 78.97
Bra005309.1-P Field mustard cytosol 71.46 78.29
Bra017278.1-P Field mustard cytosol 75.71 77.91
VIT_08s0105g00190.t01 Wine grape cytosol, plastid, vacuole 55.9 57.66
KRH68014 Soybean cytosol 56.84 57.38
VIT_08s0105g00180.t01 Wine grape cytosol, plastid, vacuole 55.42 57.18
KRG96257 Soybean cytosol 55.9 56.56
HORVU2Hr1G123130.1 Barley cytosol 6.13 56.52
KRG96268 Soybean cytosol 55.66 56.32
PGSC0003DMT400055045 Potato cytosol 27.83 55.92
Solyc01g007040.2.1 Tomato cytosol, nucleus, vacuole 23.58 55.87
KRH35744 Soybean cytosol 55.19 55.85
KRH72176 Soybean cytosol 54.95 55.74
PGSC0003DMT400054949 Potato cytosol 53.3 55.66
Solyc01g007000.2.1 Tomato cytosol, nucleus, vacuole 53.54 55.5
Solyc01g007030.2.1 Tomato cytosol 27.59 55.45
KRH32856 Soybean cytosol 54.48 55.0
PGSC0003DMT400055049 Potato cytosol, nucleus, plasma membrane 52.59 54.93
PGSC0003DMT400055050 Potato cytosol 50.47 54.59
GSMUA_Achr7P03220_001 Banana cytosol 39.86 54.52
Solyc01g007020.2.1 Tomato cytosol 52.36 54.41
PGSC0003DMT400055051 Potato cytosol 50.24 54.06
Solyc01g007010.2.1 Tomato cytosol 51.89 53.92
PGSC0003DMT400054948 Potato cytosol 34.43 51.23
PGSC0003DMT400054947 Potato cytosol 36.08 50.66
GSMUA_Achr10P... Banana cytosol 43.4 50.41
GSMUA_Achr5P01000_001 Banana cytosol 41.98 50.14
GSMUA_Achr11P... Banana cytosol 43.16 49.06
GSMUA_Achr8P30400_001 Banana cytosol 40.8 47.14
Os04t0686000-01 Rice cytosol 42.45 43.58
TraesCS6D01G367100.1 Wheat cytosol 43.16 43.57
TraesCS6D01G367600.1 Wheat cytosol 43.4 43.5
EES06927 Sorghum cytosol 43.4 43.4
OQU85086 Sorghum cytosol 43.16 42.86
TraesCS6B01G421400.1 Wheat cytosol 42.22 42.62
TraesCS6B01G421900.1 Wheat cytosol 42.22 42.62
Os01t0865700-00 Rice plastid 40.8 42.51
TraesCS6A01G382300.1 Wheat cytosol 42.22 42.42
Zm00001d042738_P001 Maize cytosol 40.8 42.4
TraesCS6B01G420600.1 Wheat cytosol 41.98 42.38
Os02t0539200-01 Rice cytosol 44.1 42.31
EES03937 Sorghum plastid 40.57 42.16
HORVU3Hr1G083500.1 Barley cytosol 40.8 41.89
TraesCS2B01G314500.1 Wheat cytosol 42.45 41.76
TraesCS3B01G409400.1 Wheat cytosol 41.04 41.73
TraesCS6A01G382800.1 Wheat cytosol 41.51 41.71
TraesCS3A01G376900.1 Wheat cytosol 41.04 41.63
TraesCS3D01G370000.1 Wheat cytosol 41.04 41.63
TraesCS2A01G298000.1 Wheat cytosol 42.22 41.53
HORVU0Hr1G003810.1 Barley cytosol 42.22 41.53
TraesCS2D01G296100.1 Wheat cytosol 41.98 41.3
HORVU6Hr1G089560.1 Barley plastid 43.87 41.24
HORVU6Hr1G089590.1 Barley plastid 43.87 41.15
Zm00001d016730_P001 Maize cytosol 42.22 41.05
Zm00001d003745_P001 Maize nucleus 42.45 40.18
EES13136 Sorghum cytosol 40.33 40.14
KXG26241 Sorghum cytosol 41.98 38.53
Zm00001d001769_P001 Maize cytosol, endoplasmic reticulum, peroxisome 34.91 37.76
Bra038683.1-P Field mustard cytosol 36.32 34.45
TraesCSU01G036400.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 33.73 33.49
TraesCS2D01G594700.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 33.49 33.26
TraesCS2B01G601300.1 Wheat cytosol 33.25 33.02
Bra034806.1-P Field mustard cytosol 35.61 32.33
Bra001424.1-P Field mustard cytosol 35.14 31.84
TraesCS6B01G209000.1 Wheat cytosol 31.13 31.21
TraesCS6A01G176800.1 Wheat cytosol 31.6 31.02
TraesCS6D01G167300.1 Wheat cytosol 31.37 30.72
HORVU6Hr1G034250.1 Barley cytosol, nucleus, peroxisome 31.13 30.48
Bra038205.1-P Field mustard cytosol 29.72 30.22
Bra022417.1-P Field mustard cytosol 29.72 29.86
Bra022415.1-P Field mustard cytosol 29.72 29.86
HORVU2Hr1G123050.1 Barley cytosol 23.35 29.46
Bra014206.1-P Field mustard cytosol 29.25 29.31
KXG23010 Sorghum cytosol 31.37 29.3
Os12t0161100-00 Rice cytosol 30.19 29.16
Bra025442.1-P Field mustard mitochondrion 29.01 28.08
GSMUA_Achr9P29630_001 Banana cytosol 39.86 27.35
Bra039752.1-P Field mustard cytosol 27.12 27.25
Bra024318.1-P Field mustard cytosol 25.24 25.54
Bra040605.1-P Field mustard mitochondrion 22.41 25.33
Bra022347.1-P Field mustard cytosol 24.76 24.76
Bra001067.1-P Field mustard mitochondrion 21.46 24.73
Bra037568.1-P Field mustard cytosol 23.58 24.21
Bra001717.1-P Field mustard cytosol 24.06 24.06
Bra037833.1-P Field mustard cytosol 23.35 22.35
Bra029975.1-P Field mustard cytosol 23.35 22.35
Zm00001d023480_P001 Maize cytosol 27.83 21.11
Protein Annotations
Gene3D:1.25.10.10Gene3D:3.30.40.10MapMan:35.1InterPro:ARM-likeInterPro:ARM-type_foldEnsemblPlantsGene:Bra033430
EnsemblPlants:Bra033430.1EnsemblPlants:Bra033430.1-PGO:GO:0003674GO:GO:0003824GO:GO:0004842GO:GO:0005488
GO:GO:0006464GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016567GO:GO:0016740
GO:GO:0019538InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083UniProt:M4EX94PFAM:PF04564
PFscan:PS51698PANTHER:PTHR22849PANTHER:PTHR22849:SF65SMART:SM00504SUPFAM:SSF48371SUPFAM:SSF57850
UniParc:UPI0002545463InterPro:Ubox_domainInterPro:Znf_RING/FYVE/PHD:::
Description
AT3G52450 (E=4e-133) PUB22 | PUB22 (PLANT U-BOX 22); ubiquitin-protein ligase
Coordinates
chrA04:+:4157011..4158285
Molecular Weight (calculated)
47648.3 Da
IEP (calculated)
8.658
GRAVY (calculated)
-0.062
Length
424 amino acids
Sequence
(BLAST)
001: MDQEIEIPSF FLCPISLDIM KDPVIVSTGI TYDRDSIEKW LFTGKKNSCP VTKQVITETD LTPNHTLRRL IQSWCSLNAS HGIETIPTPK PPISKSEIER
101: LIKDSSSSHK NQVKYLKRLR QIVTENNTNT RCLEAAEVPE FLANIISNLV GTSSSLNDIS NILENRFDSS RSLMDEALSL LYHLDASETA RKSLLNNKKV
201: TNIVKTLTKI MQRGIYESRT YATLLLKKIL EVADPMQIIL LERDLFNEVV QILHDQISHK ATKSAMQILM IICPWGRNRH KAVEAGAVSM IIELLLDESF
301: SSERRNVEMT MVVLDMLCQC AEGRADFLNH GAAIAVVSKK ILRVSQITSE RAARVLLSVG RFCATPCLLQ EMLQLGVVAK LCLVLQVSCG NKTKGKAKEL
401: LQLHARVWRE SPCVPRNLYA SYPA
Best Arabidopsis Sequence Match ( AT3G52450.1 )
(BLAST)
001: MDQEIEIPSF FLCPISLDIM KDPVIVSTGI TYDRESIEKW LFSGKKNSCP VTKQVITETD LTPNHTLRRL IQSWCTLNAS YGIERIPTPK PPICKSEIEK
101: LIKESSSSHL NQVKCLKRLR QIVSENTTNK RCLEAAEVPE FLANIVSNSV DTYNSPSSSL SSSNLNDMCQ SNMLENRFDS SRSLMDEALS VLYHLDTSET
201: ALKSLLNNKK GTNLVKTLTK IMQRGIYESR AYAALLLKKL LEVADPMQII LLERELFGEV IQILHDQISH KATRSAMQIL VITCPWGRNR HKAVEGGTIS
301: MIIELLMDDT FSSERRNSEM AMVVLDMLCQ CAEGRAEFLN HGAAIAVVSK KILRVSQITS ERAVRVLLSV GRFCATPSLL QEMLQLGVVA KLCLVLQVSC
401: GNKTKEKAKE LLKLHARVWR ESPCVPRNLY DSYPA
Arabidopsis Description
PUB22RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VML4]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.