Factsheet for Bra017278.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013872.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35930.1	Bra013872.1-P	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY40422	Canola	cytosol	100.0	100.0
CDY32070	Canola	cytosol	97.82	97.82
Bra023044.1-P	Field mustard	cytosol	91.02	91.69
AT2G35930.1	Thale cress	cytosol	90.05	90.27
Bra005309.1-P	Field mustard	cytosol	84.47	89.92
Bra012803.1-P	Field mustard	cytosol	78.64	76.6
Bra006925.1-P	Field mustard	cytosol	80.83	76.55
Bra033430.1-P	Field mustard	cytosol	77.91	75.71
VIT_08s0105g00190.t01	Wine grape	cytosol, plastid, vacuole	59.47	59.61
VIT_08s0105g00180.t01	Wine grape	cytosol, plastid, vacuole	59.22	59.37
GSMUA_Achr7P03220_001	Banana	cytosol	43.93	58.39
Solyc01g007040.2.1	Tomato	cytosol, nucleus, vacuole	25.0	57.54
KRH68014	Soybean	cytosol	58.5	57.38
PGSC0003DMT400054949	Potato	cytosol	56.31	57.14
PGSC0003DMT400055049	Potato	cytosol, nucleus, plasma membrane	56.07	56.9
Solyc01g007000.2.1	Tomato	cytosol, nucleus, vacuole	56.31	56.72
KRH35744	Soybean	cytosol	57.28	56.32
PGSC0003DMT400055050	Potato	cytosol	53.4	56.12
Solyc01g007030.2.1	Tomato	cytosol	28.64	55.92
PGSC0003DMT400055045	Potato	cytosol	28.64	55.92
PGSC0003DMT400055051	Potato	cytosol	53.4	55.84
PGSC0003DMT400054948	Potato	cytosol	38.59	55.79
KRG96257	Soybean	cytosol	56.55	55.61
Solyc01g007010.2.1	Tomato	cytosol	54.85	55.39
Solyc01g007020.2.1	Tomato	cytosol	54.85	55.39
KRG96268	Soybean	cytosol	56.31	55.37
KRH72176	Soybean	cytosol	55.34	54.55
KRH32856	Soybean	cytosol	55.1	54.05
PGSC0003DMT400054947	Potato	cytosol	38.59	52.65
HORVU2Hr1G123130.1	Barley	cytosol	5.83	52.17
GSMUA_Achr5P01000_001	Banana	cytosol	44.9	52.11
GSMUA_Achr8P30400_001	Banana	cytosol	45.15	50.68
GSMUA_Achr10P...	Banana	cytosol	44.42	50.14
GSMUA_Achr11P...	Banana	cytosol	45.39	50.13
TraesCS6D01G367100.1	Wheat	cytosol	47.82	46.9
EES06927	Sorghum	cytosol	47.82	46.46
OQU85086	Sorghum	cytosol	48.06	46.37
TraesCS6B01G421900.1	Wheat	cytosol	46.84	45.95
TraesCS6D01G367600.1	Wheat	cytosol	47.09	45.86
TraesCS6B01G421400.1	Wheat	cytosol	46.36	45.48
Os04t0686000-01	Rice	cytosol	45.39	45.28
TraesCS6A01G382300.1	Wheat	cytosol	46.36	45.26
TraesCS6B01G420600.1	Wheat	cytosol	46.12	45.24
TraesCS6A01G382800.1	Wheat	cytosol	45.87	44.79
Os02t0539200-01	Rice	cytosol	47.09	43.89
Os01t0865700-00	Rice	plastid	42.96	43.49
HORVU6Hr1G089560.1	Barley	plastid	47.09	43.02
HORVU6Hr1G089590.1	Barley	plastid	47.09	42.92
Zm00001d042738_P001	Maize	cytosol	42.48	42.89
EES03937	Sorghum	plastid	42.48	42.89
Zm00001d016730_P001	Maize	cytosol	45.39	42.89
TraesCS3D01G370000.1	Wheat	cytosol	43.2	42.58
TraesCS3B01G409400.1	Wheat	cytosol	42.96	42.45
HORVU3Hr1G083500.1	Barley	cytosol	42.48	42.37
TraesCS3A01G376900.1	Wheat	cytosol	42.96	42.34
EES13136	Sorghum	cytosol	43.45	42.02
TraesCS2B01G314500.1	Wheat	cytosol	43.2	41.3
TraesCS2A01G298000.1	Wheat	cytosol	42.96	41.07
TraesCS2D01G296100.1	Wheat	cytosol	42.72	40.84
Zm00001d003745_P001	Maize	nucleus	44.17	40.62
HORVU0Hr1G003810.1	Barley	cytosol	42.23	40.37
KXG26241	Sorghum	cytosol	44.9	40.04
Zm00001d001769_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	37.62	39.54
Bra038683.1-P	Field mustard	cytosol	40.53	37.36
Bra034806.1-P	Field mustard	cytosol	40.29	35.55
Bra001424.1-P	Field mustard	cytosol	39.56	34.83
TraesCSU01G036400.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	35.68	34.43
TraesCS2B01G601300.1	Wheat	cytosol	35.44	34.19
TraesCS2D01G594700.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	35.44	34.19
HORVU2Hr1G123050.1	Barley	cytosol	25.97	31.85
TraesCS6B01G209000.1	Wheat	cytosol	32.28	31.44
TraesCS6A01G176800.1	Wheat	cytosol	32.77	31.25
TraesCS6D01G167300.1	Wheat	cytosol	32.52	30.95
HORVU6Hr1G034250.1	Barley	cytosol, nucleus, peroxisome	32.04	30.48
Bra038205.1-P	Field mustard	cytosol	30.83	30.46
GSMUA_Achr9P29630_001	Banana	cytosol	45.15	30.1
KXG23010	Sorghum	cytosol	33.01	29.96
Os12t0161100-00	Rice	cytosol	31.55	29.61
Bra014206.1-P	Field mustard	cytosol	30.34	29.55
Bra022417.1-P	Field mustard	cytosol	30.1	29.38
Bra022415.1-P	Field mustard	cytosol	30.1	29.38
Bra025442.1-P	Field mustard	mitochondrion	30.58	28.77
Bra039752.1-P	Field mustard	cytosol	29.37	28.67
Bra022347.1-P	Field mustard	cytosol	27.18	26.42
Bra024318.1-P	Field mustard	cytosol	26.21	25.78
Bra001067.1-P	Field mustard	mitochondrion	22.33	25.0
Bra037568.1-P	Field mustard	cytosol	24.51	24.46
Bra040605.1-P	Field mustard	mitochondrion	22.09	24.27
Bra001717.1-P	Field mustard	cytosol	24.51	23.82
Bra029975.1-P	Field mustard	cytosol	23.79	22.12
Bra037833.1-P	Field mustard	cytosol	23.79	22.12
Zm00001d023480_P001	Maize	cytosol	29.37	21.65

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	EnsemblPlantsGene:Bra017278
EnsemblPlants:Bra017278.1	EnsemblPlants:Bra017278.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M4DL97	PFAM:PF04564
PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF65	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI0002543E61	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

AT2G35930 (E=2e-205) PUB23 | PUB23 (PLANT U-BOX 23); ubiquitin-protein ligase

Coordinates

chrA04:-:15583692..15584930

Molecular Weight (calculated)

46180.6 Da

IEP (calculated)

8.323

GRAVY (calculated)

-0.072

Length

412 amino acids

Sequence
(BLAST)

001: MDEEIEIPPF FLCPISLEIM KDPVIVSTGI TYDRDSIEKW LFSGKKNSCP VTKQDITDAD LTPNHTLRRL IQSWCTLNAS YGVERFPTPR PPICKSEIEK
101: LIKDSASSHQ NQVKCLKRLR QIVSENKTNK RCLEAAGVPE FLATIVSNNE SENVFDSSMS LTDEALSLLY HLETSETVLK NLLNNKKGRD IVSSLIKIMQ
201: RGMYESRAYA TLLLKNILEV AEPMHIMNLK PSVFTEVVQI LDDRISNKAT KAALHILVNI CPWGRNRHKA VEAGAISMMI ELLMDESFSS DRRGPEMAMV
301: VLDLLCQCAE GRAEFLNHGA AIAVVCKKIL RISQTASDRA VRVLLSVGRF CATPSLLHEM LQLGVVSKLC LVLQVNCGSK TKEKAKELLK LHARVWKDSP
401: CLPRNMILAY PS

Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)

001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C

Arabidopsis Description

PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.