Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- plastid 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS3A01G376900.1 | Wheat | cytosol | 97.85 | 97.85 |
TraesCS3B01G409400.1 | Wheat | cytosol | 97.37 | 97.6 |
HORVU3Hr1G083500.1 | Barley | cytosol | 96.17 | 97.34 |
Os01t0865700-00 | Rice | plastid | 84.69 | 86.98 |
EES03937 | Sorghum | plastid | 78.47 | 80.39 |
Zm00001d042738_P001 | Maize | cytosol | 76.08 | 77.94 |
GSMUA_Achr7P03220_001 | Banana | cytosol | 42.58 | 57.42 |
GSMUA_Achr5P01000_001 | Banana | cytosol | 45.69 | 53.8 |
Solyc01g007030.2.1 | Tomato | cytosol | 24.88 | 49.29 |
PGSC0003DMT400055045 | Potato | cytosol | 24.88 | 49.29 |
KRH22633 | Soybean | cytosol, nucleus | 45.22 | 46.9 |
KRH26691 | Soybean | cytosol | 42.58 | 45.99 |
TraesCS2D01G594700.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 46.41 | 45.43 |
VIT_08s0105g00180.t01 | Wine grape | cytosol, plastid, vacuole | 44.02 | 44.77 |
VIT_06s0009g00320.t01 | Wine grape | cytosol | 44.26 | 44.69 |
VIT_08s0105g00190.t01 | Wine grape | cytosol, plastid, vacuole | 43.78 | 44.53 |
CDX75084 | Canola | cytosol | 43.06 | 44.34 |
CDX78096 | Canola | cytosol | 41.15 | 44.22 |
CDX79645 | Canola | cytosol | 43.06 | 44.12 |
KRH25324 | Soybean | cytosol | 38.28 | 44.08 |
Solyc11g068920.1.1 | Tomato | cytosol | 42.58 | 44.06 |
AT2G35930.1 | Thale cress | cytosol | 43.3 | 44.04 |
CDX95337 | Canola | cytosol | 43.06 | 44.01 |
Bra005309.1-P | Field mustard | cytosol | 40.67 | 43.93 |
PGSC0003DMT400050493 | Potato | cytosol | 42.34 | 43.81 |
KRH32856 | Soybean | cytosol | 44.02 | 43.81 |
Bra023044.1-P | Field mustard | cytosol | 42.58 | 43.52 |
CDX84587 | Canola | cytosol | 42.58 | 43.52 |
CDY32070 | Canola | cytosol | 42.82 | 43.45 |
Solyc01g009330.1.1 | Tomato | cytosol | 44.26 | 43.43 |
CDX84168 | Canola | cytosol | 42.11 | 43.35 |
TraesCS6D01G367100.1 | Wheat | cytosol | 43.54 | 43.33 |
KRH72176 | Soybean | cytosol | 43.3 | 43.3 |
CDY59599 | Canola | cytosol | 42.34 | 43.28 |
TraesCS6D01G367600.1 | Wheat | cytosol | 43.78 | 43.26 |
CDY40422 | Canola | cytosol | 42.58 | 43.2 |
Bra017278.1-P | Field mustard | cytosol | 42.58 | 43.2 |
KRH68014 | Soybean | cytosol | 43.3 | 43.1 |
CDY23218 | Canola | cytosol | 40.67 | 42.93 |
KRH35744 | Soybean | cytosol | 42.82 | 42.72 |
KRG96257 | Soybean | cytosol | 42.58 | 42.48 |
KRG96268 | Soybean | cytosol | 42.34 | 42.24 |
PGSC0003DMT400054949 | Potato | cytosol | 40.91 | 42.12 |
Bra012803.1-P | Field mustard | cytosol | 42.34 | 41.84 |
Solyc01g007000.2.1 | Tomato | cytosol, nucleus, vacuole | 40.91 | 41.81 |
TraesCS2D01G296100.1 | Wheat | cytosol | 43.06 | 41.76 |
PGSC0003DMT400055049 | Potato | cytosol, nucleus, plasma membrane | 40.43 | 41.63 |
PGSC0003DMT400055050 | Potato | cytosol | 39.0 | 41.58 |
PGSC0003DMT400055051 | Potato | cytosol | 39.0 | 41.37 |
AT3G52450.1 | Thale cress | cytosol | 42.82 | 41.15 |
Bra033430.1-P | Field mustard | cytosol | 41.63 | 41.04 |
Solyc01g007020.2.1 | Tomato | cytosol | 39.95 | 40.93 |
Bra006925.1-P | Field mustard | cytosol | 42.58 | 40.92 |
PGSC0003DMT400038197 | Potato | cytosol | 44.02 | 40.53 |
Solyc01g007010.2.1 | Tomato | cytosol | 39.47 | 40.44 |
PGSC0003DMT400054947 | Potato | cytosol | 28.71 | 39.74 |
TraesCS6D01G167300.1 | Wheat | cytosol | 36.84 | 35.57 |
PGSC0003DMT400054948 | Potato | cytosol | 24.16 | 35.44 |
Solyc01g007040.2.1 | Tomato | cytosol, nucleus, vacuole | 14.35 | 33.52 |
TraesCS2D01G449900.1 | Wheat | cytosol | 30.62 | 30.62 |
TraesCS6D01G251200.1 | Wheat | cytosol | 31.58 | 30.56 |
GSMUA_Achr9P29630_001 | Banana | cytosol | 44.26 | 29.94 |
TraesCS7D01G201600.1 | Wheat | mitochondrion | 31.58 | 29.86 |
TraesCS6D01G292200.1 | Wheat | mitochondrion | 31.58 | 29.07 |
TraesCS7D01G393700.1 | Wheat | extracellular, vacuole | 26.32 | 28.8 |
TraesCS6D01G237900.1 | Wheat | extracellular | 27.99 | 28.75 |
TraesCS2D01G305400.1 | Wheat | cytosol | 26.79 | 28.0 |
TraesCS4D01G229900.1 | Wheat | mitochondrion | 28.95 | 27.5 |
TraesCS2D01G296700.1 | Wheat | cytosol, mitochondrion, plastid | 28.71 | 27.21 |
TraesCS4D01G237600.1 | Wheat | cytosol | 28.95 | 26.36 |
TraesCS1D01G274600.1 | Wheat | mitochondrion | 24.16 | 22.3 |
Protein Annotations
Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:ARM-like | InterPro:ARM-type_fold | InterPro:Armadillo |
ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 |
GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 |
GO:GO:0019538 | InterPro:IPR000225 | InterPro:IPR003613 | InterPro:IPR011989 | InterPro:IPR013083 | PFAM:PF04564 |
PFscan:PS50176 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF66 | SMART:SM00504 | SUPFAM:SSF48371 |
SUPFAM:SSF57850 | EnsemblPlantsGene:TraesCS3D01G370000 | EnsemblPlants:TraesCS3D01G370000.1 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD | TIGR:cd16664 |
SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3D:-:482606898..482608154
Molecular Weight (calculated)
44528.3 Da
IEP (calculated)
8.955
GRAVY (calculated)
0.187
Length
418 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAAMAAPSA LPAEVPSYFL CPISLQLMRD PVTLPTGISY DRAAISRWLA ASAAPAACST SQRTCPVTRQ PLEPELQLTP NHTLRRLIGS WVASVSPGSD
101: VEGEVAALRP VRRDELAKLL SDAAAAQVGA LRKLGELVAE CEDTRAMLES QDGVFDALSR VLTGASACST AREEAVGVLS SLRIPEQELV RVVSRHGNLA
201: ESLTAVLRSS NLQSRAQAVR LVRSLADVSV PAWVIGLNQE LLAEVIRVVR DRVSTRATKA ALHALSALCP YGRNRVKIVG AGAVPALVEL LLDEPERRVC
301: ELALAVLDRL CTCAEGRAEL VAHAAGVAVV GKKVLRVSEA ASERAVRVLR SVARHAATPA VLQEMAQAGV VGKLCLALRS ELCGVKTKEK AHEVLKLHSR
401: IWRSSPCLSP KFLALYPS
101: VEGEVAALRP VRRDELAKLL SDAAAAQVGA LRKLGELVAE CEDTRAMLES QDGVFDALSR VLTGASACST AREEAVGVLS SLRIPEQELV RVVSRHGNLA
201: ESLTAVLRSS NLQSRAQAVR LVRSLADVSV PAWVIGLNQE LLAEVIRVVR DRVSTRATKA ALHALSALCP YGRNRVKIVG AGAVPALVEL LLDEPERRVC
301: ELALAVLDRL CTCAEGRAEL VAHAAGVAVV GKKVLRVSEA ASERAVRVLR SVARHAATPA VLQEMAQAGV VGKLCLALRS ELCGVKTKEK AHEVLKLHSR
401: IWRSSPCLSP KFLALYPS
001: MDQEEEEIEI PNYFICPISL EIMKDPVTTV SGITYDRQNI VKWLEKVPSC PVTKQPLPLD SDLTPNHMLR RLIQHWCVEN ETRGVVRIST PRVPPGKLNV
101: VEEIKNLKKF GQEALGREET LQKLEVLAMD GNNRRLMCEC GVHKSLILFV VKCTSEDEDG RRRIKGLDES LRLLHLIGIP SNDAKTILME NDRVMESLTW
201: VLHQEDFLSK AYTIVLLRNL TEYTSSHIVE RLNPEIFKGI IGFLKDVVNS VNRTSPTVRE TVQSSSRPSL GKTEPSKLDH SLVIKQAVTA ALMILLETSS
301: WSRNRSLLVD LGAVSELIEL EISYTGEKRI TELMLGVLSR LCCCANGRAE ILAHRGGIAV VTKRLLRVSP AADDRAISIL TTVSKFSPEN MVVEEMVNVG
401: TVEKLCSVLG MDCGLNLKEK AKEILKDHFD EWKKFPCIDI TLLTKLLSIS PKGPKI
101: VEEIKNLKKF GQEALGREET LQKLEVLAMD GNNRRLMCEC GVHKSLILFV VKCTSEDEDG RRRIKGLDES LRLLHLIGIP SNDAKTILME NDRVMESLTW
201: VLHQEDFLSK AYTIVLLRNL TEYTSSHIVE RLNPEIFKGI IGFLKDVVNS VNRTSPTVRE TVQSSSRPSL GKTEPSKLDH SLVIKQAVTA ALMILLETSS
301: WSRNRSLLVD LGAVSELIEL EISYTGEKRI TELMLGVLSR LCCCANGRAE ILAHRGGIAV VTKRLLRVSP AADDRAISIL TTVSKFSPEN MVVEEMVNVG
401: TVEKLCSVLG MDCGLNLKEK AKEILKDHFD EWKKFPCIDI TLLTKLLSIS PKGPKI
Arabidopsis Description
PUB24E3 ubiquitin-protein ligase PUB24 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF15]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.