Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78096 | Canola | cytosol | 94.87 | 99.74 |
| Bra006925.1-P | Field mustard | cytosol | 100.0 | 94.02 |
| CDX95337 | Canola | cytosol | 92.18 | 92.18 |
| CDY23218 | Canola | cytosol | 88.75 | 91.67 |
| AT3G52450.1 | Thale cress | cytosol | 92.91 | 87.36 |
| CDX79645 | Canola | cytosol | 81.66 | 81.86 |
| CDX75084 | Canola | cytosol | 80.68 | 81.28 |
| CDX84168 | Canola | cytosol | 80.2 | 80.79 |
| CDX84587 | Canola | cytosol | 80.68 | 80.68 |
| CDY40422 | Canola | cytosol | 81.17 | 80.58 |
| CDY32070 | Canola | cytosol | 80.2 | 79.61 |
| VIT_08s0105g00190.t01 | Wine grape | cytosol, plastid, vacuole | 60.15 | 59.85 |
| VIT_08s0105g00180.t01 | Wine grape | cytosol, plastid, vacuole | 59.9 | 59.61 |
| KRH68014 | Soybean | cytosol | 60.64 | 59.05 |
| KRG96257 | Soybean | cytosol | 59.9 | 58.47 |
| PGSC0003DMT400055045 | Potato | cytosol | 30.07 | 58.29 |
| KRG96268 | Soybean | cytosol | 59.66 | 58.23 |
| KRH35744 | Soybean | cytosol | 59.66 | 58.23 |
| Solyc01g007030.2.1 | Tomato | cytosol | 29.83 | 57.82 |
| PGSC0003DMT400054949 | Potato | cytosol | 57.21 | 57.64 |
| PGSC0003DMT400055049 | Potato | cytosol, nucleus, plasma membrane | 56.72 | 57.14 |
| Solyc01g007040.2.1 | Tomato | cytosol, nucleus, vacuole | 24.94 | 56.98 |
| Solyc01g007000.2.1 | Tomato | cytosol, nucleus, vacuole | 56.97 | 56.97 |
| PGSC0003DMT400055050 | Potato | cytosol | 54.52 | 56.89 |
| Solyc01g007020.2.1 | Tomato | cytosol | 56.48 | 56.62 |
| PGSC0003DMT400055051 | Potato | cytosol | 54.52 | 56.6 |
| Solyc01g007010.2.1 | Tomato | cytosol | 55.99 | 56.13 |
| KRH72176 | Soybean | cytosol | 57.21 | 55.98 |
| GSMUA_Achr7P03220_001 | Banana | cytosol | 42.3 | 55.81 |
| KRH32856 | Soybean | cytosol | 57.21 | 55.71 |
| PGSC0003DMT400054948 | Potato | cytosol | 37.65 | 54.04 |
| PGSC0003DMT400054947 | Potato | cytosol | 38.88 | 52.65 |
| HORVU2Hr1G123130.1 | Barley | cytosol | 5.87 | 52.17 |
| GSMUA_Achr5P01000_001 | Banana | cytosol | 44.25 | 50.99 |
| GSMUA_Achr11P... | Banana | cytosol | 45.48 | 49.87 |
| GSMUA_Achr10P... | Banana | cytosol | 44.5 | 49.86 |
| GSMUA_Achr8P30400_001 | Banana | cytosol | 42.05 | 46.87 |
| EES06927 | Sorghum | cytosol | 45.97 | 44.34 |
| Os04t0686000-01 | Rice | cytosol | 44.5 | 44.07 |
| OQU85086 | Sorghum | cytosol | 45.72 | 43.79 |
| TraesCS6D01G367100.1 | Wheat | cytosol | 44.5 | 43.33 |
| Os01t0865700-00 | Rice | plastid | 43.03 | 43.24 |
| TraesCS6D01G367600.1 | Wheat | cytosol | 44.5 | 43.03 |
| TraesCS6B01G421400.1 | Wheat | cytosol | 44.01 | 42.86 |
| TraesCS6B01G421900.1 | Wheat | cytosol | 44.01 | 42.86 |
| Os02t0539200-01 | Rice | cytosol | 46.21 | 42.76 |
| EES03937 | Sorghum | plastid | 42.54 | 42.65 |
| Zm00001d042738_P001 | Maize | cytosol | 42.54 | 42.65 |
| TraesCS6B01G420600.1 | Wheat | cytosol | 43.52 | 42.38 |
| TraesCS3D01G370000.1 | Wheat | cytosol | 43.28 | 42.34 |
| TraesCS2B01G314500.1 | Wheat | cytosol | 44.5 | 42.23 |
| TraesCS3B01G409400.1 | Wheat | cytosol | 43.03 | 42.21 |
| TraesCS6A01G382300.1 | Wheat | cytosol | 43.52 | 42.18 |
| HORVU3Hr1G083500.1 | Barley | cytosol | 42.54 | 42.13 |
| TraesCS3A01G376900.1 | Wheat | cytosol | 43.03 | 42.11 |
| TraesCS2A01G298000.1 | Wheat | cytosol | 44.25 | 42.0 |
| TraesCS2D01G296100.1 | Wheat | cytosol | 43.77 | 41.53 |
| TraesCS6A01G382800.1 | Wheat | cytosol | 42.79 | 41.47 |
| HORVU0Hr1G003810.1 | Barley | cytosol | 43.52 | 41.3 |
| Zm00001d016730_P001 | Maize | cytosol | 44.01 | 41.28 |
| HORVU6Hr1G089560.1 | Barley | plastid | 44.99 | 40.8 |
| HORVU6Hr1G089590.1 | Barley | plastid | 44.99 | 40.71 |
| EES13136 | Sorghum | cytosol | 42.3 | 40.61 |
| Zm00001d003745_P001 | Maize | nucleus | 43.03 | 39.29 |
| Zm00001d001769_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome | 37.16 | 38.78 |
| KXG26241 | Sorghum | cytosol | 43.28 | 38.31 |
| CDY47911 | Canola | cytosol | 37.41 | 36.26 |
| CDY08490 | Canola | cytosol | 37.16 | 34.39 |
| CDY67531 | Canola | cytosol | 37.41 | 34.23 |
| CDY01063 | Canola | cytosol | 36.67 | 34.09 |
| CDY53920 | Canola | cytosol | 35.94 | 33.72 |
| TraesCSU01G036400.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 34.96 | 33.49 |
| TraesCS2D01G594700.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 34.72 | 33.26 |
| TraesCS2B01G601300.1 | Wheat | cytosol | 34.47 | 33.02 |
| CDX73849 | Canola | cytosol | 36.43 | 31.91 |
| TraesCS6B01G209000.1 | Wheat | cytosol | 32.27 | 31.21 |
| TraesCS6A01G176800.1 | Wheat | cytosol | 32.76 | 31.02 |
| CDX99233 | Canola | cytosol, peroxisome, plastid | 31.78 | 30.88 |
| TraesCS6D01G167300.1 | Wheat | cytosol | 32.52 | 30.72 |
| CDX95458 | Canola | cytosol | 31.3 | 30.7 |
| CDX92328 | Canola | cytosol | 31.54 | 30.5 |
| CDY50158 | Canola | cytosol | 31.05 | 30.46 |
| HORVU6Hr1G034250.1 | Barley | cytosol, nucleus, peroxisome | 32.03 | 30.25 |
| HORVU2Hr1G123050.1 | Barley | cytosol | 24.45 | 29.76 |
| CDY27655 | Canola | mitochondrion | 31.78 | 29.68 |
| KXG23010 | Sorghum | cytosol | 32.52 | 29.3 |
| CDX99694 | Canola | mitochondrion | 31.05 | 29.0 |
| CDY16513 | Canola | cytosol | 29.83 | 28.84 |
| CDY59286 | Canola | cytosol | 29.58 | 28.61 |
| Os12t0161100-00 | Rice | cytosol | 30.56 | 28.47 |
| GSMUA_Achr9P29630_001 | Banana | cytosol | 42.3 | 27.99 |
| CDY50319 | Canola | cytosol | 28.85 | 27.63 |
| CDY16432 | Canola | cytosol | 28.85 | 27.57 |
| CDX92262 | Canola | cytosol | 26.16 | 25.91 |
| CDY08864 | Canola | cytosol | 26.41 | 25.78 |
| CDX74232 | Canola | cytosol, extracellular, mitochondrion, plastid | 22.98 | 25.54 |
| CDX84538 | Canola | cytosol | 26.16 | 25.54 |
| CDY51529 | Canola | mitochondrion | 23.23 | 25.33 |
| CDX99325 | Canola | cytosol | 26.16 | 25.3 |
| CDX92016 | Canola | mitochondrion | 22.74 | 25.27 |
| CDY28714 | Canola | mitochondrion | 22.49 | 24.53 |
| CDY71041 | Canola | cytosol | 24.45 | 24.21 |
| CDX75980 | Canola | cytosol | 24.69 | 23.82 |
| CDX82332 | Canola | cytosol | 24.45 | 23.58 |
| CDY18670 | Canola | cytosol | 24.45 | 22.57 |
| CDY69247 | Canola | cytosol | 24.21 | 22.35 |
| CDY53333 | Canola | cytosol | 24.21 | 22.15 |
| CDX83098 | Canola | cytosol | 23.72 | 21.9 |
| Zm00001d023480_P001 | Maize | cytosol | 29.1 | 21.29 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078J8D7 | UniProt:A0A078J8D7 | InterPro:ARM-like |
| InterPro:ARM-type_fold | EnsemblPlants:CDY59599 | ProteinID:CDY59599 | ProteinID:CDY59599.1 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00027467001 | InterPro:IPR003613 | InterPro:IPR011989 |
| InterPro:IPR013083 | PFAM:PF04078 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF65 |
| SMART:SM00504 | SUPFAM:SSF48371 | SUPFAM:SSF57850 | UniPathway:UPA00143 | UniParc:UPI0004EECB56 | InterPro:Ubox_domain |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
BnaCnng35300DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078J8D7]
Coordinates
chrLK033786:+:3145..4540
Molecular Weight (calculated)
46238.9 Da
IEP (calculated)
9.192
GRAVY (calculated)
-0.090
Length
409 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQEIEIPTF FLCPISLDIM KDPVIVSTGI TYDRDSIEKW LFTGKKNTCP VTKQVITETD LTPNHTLRRL IQSWCTLNAS HGIERIPTPK PPISKSEIEK
101: LIKDSSSSHQ NQVKCLKRLR QIVSENTTNK RCLEAANVPE FLAKIVSNSN RFDSSRSLMD EALSLLYHLD TSETARKSLL NNKKGTNLVK TLTKIMQRGI
201: YESRAYATFL LKKILEVADP MQIILLEREL FNEVVQILHD QISHKATKSA MQILVIICPW GRNRHKAVEA GAISMIIELL MDETFSSERR TLEMAMVVLD
301: MLCQCAEGRA EFLNHCAAIA VVSKKILRVS QITSERAVRV LLSIGRFCAT PSLLQDMLQL GVVAKMCLVL QVSCGNKTKE KAKELLKLHA RVWRESPCVP
401: RNLYASYPA
101: LIKDSSSSHQ NQVKCLKRLR QIVSENTTNK RCLEAANVPE FLAKIVSNSN RFDSSRSLMD EALSLLYHLD TSETARKSLL NNKKGTNLVK TLTKIMQRGI
201: YESRAYATFL LKKILEVADP MQIILLEREL FNEVVQILHD QISHKATKSA MQILVIICPW GRNRHKAVEA GAISMIIELL MDETFSSERR TLEMAMVVLD
301: MLCQCAEGRA EFLNHCAAIA VVSKKILRVS QITSERAVRV LLSIGRFCAT PSLLQDMLQL GVVAKMCLVL QVSCGNKTKE KAKELLKLHA RVWRESPCVP
401: RNLYASYPA
001: MDQEIEIPSF FLCPISLDIM KDPVIVSTGI TYDRESIEKW LFSGKKNSCP VTKQVITETD LTPNHTLRRL IQSWCTLNAS YGIERIPTPK PPICKSEIEK
101: LIKESSSSHL NQVKCLKRLR QIVSENTTNK RCLEAAEVPE FLANIVSNSV DTYNSPSSSL SSSNLNDMCQ SNMLENRFDS SRSLMDEALS VLYHLDTSET
201: ALKSLLNNKK GTNLVKTLTK IMQRGIYESR AYAALLLKKL LEVADPMQII LLERELFGEV IQILHDQISH KATRSAMQIL VITCPWGRNR HKAVEGGTIS
301: MIIELLMDDT FSSERRNSEM AMVVLDMLCQ CAEGRAEFLN HGAAIAVVSK KILRVSQITS ERAVRVLLSV GRFCATPSLL QEMLQLGVVA KLCLVLQVSC
401: GNKTKEKAKE LLKLHARVWR ESPCVPRNLY DSYPA
101: LIKESSSSHL NQVKCLKRLR QIVSENTTNK RCLEAAEVPE FLANIVSNSV DTYNSPSSSL SSSNLNDMCQ SNMLENRFDS SRSLMDEALS VLYHLDTSET
201: ALKSLLNNKK GTNLVKTLTK IMQRGIYESR AYAALLLKKL LEVADPMQII LLERELFGEV IQILHDQISH KATRSAMQIL VITCPWGRNR HKAVEGGTIS
301: MIIELLMDDT FSSERRNSEM AMVVLDMLCQ CAEGRAEFLN HGAAIAVVSK KILRVSQITS ERAVRVLLSV GRFCATPSLL QEMLQLGVVA KLCLVLQVSC
401: GNKTKEKAKE LLKLHARVWR ESPCVPRNLY DSYPA
Arabidopsis Description
PUB22RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VML4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.