CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX89437
CDY03368

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35930.1	CDX89437	AT4G25200.1	21798944
AT2G35930.1	CDY03368	AT4G25200.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra017278.1-P	Field mustard	cytosol	100.0	100.0
CDY32070	Canola	cytosol	97.82	97.82
CDX84587	Canola	cytosol	91.02	91.69
CDX79645	Canola	cytosol	90.78	91.67
CDX75084	Canola	cytosol	89.08	90.39
AT2G35930.1	Thale cress	cytosol	90.05	90.27
CDX84168	Canola	cytosol	88.59	89.9
CDY59599	Canola	cytosol	80.58	81.17
CDX78096	Canola	cytosol	75.97	80.46
CDX95337	Canola	cytosol	78.88	79.46
CDY23218	Canola	cytosol	75.24	78.28
VIT_08s0105g00190.t01	Wine grape	cytosol, plastid, vacuole	59.47	59.61
VIT_08s0105g00180.t01	Wine grape	cytosol, plastid, vacuole	59.22	59.37
GSMUA_Achr7P03220_001	Banana	cytosol	43.93	58.39
Solyc01g007040.2.1	Tomato	cytosol, nucleus, vacuole	25.0	57.54
KRH68014	Soybean	cytosol	58.5	57.38
PGSC0003DMT400054949	Potato	cytosol	56.31	57.14
PGSC0003DMT400055049	Potato	cytosol, nucleus, plasma membrane	56.07	56.9
Solyc01g007000.2.1	Tomato	cytosol, nucleus, vacuole	56.31	56.72
KRH35744	Soybean	cytosol	57.28	56.32
PGSC0003DMT400055050	Potato	cytosol	53.4	56.12
PGSC0003DMT400055045	Potato	cytosol	28.64	55.92
Solyc01g007030.2.1	Tomato	cytosol	28.64	55.92
PGSC0003DMT400055051	Potato	cytosol	53.4	55.84
PGSC0003DMT400054948	Potato	cytosol	38.59	55.79
KRG96257	Soybean	cytosol	56.55	55.61
Solyc01g007010.2.1	Tomato	cytosol	54.85	55.39
Solyc01g007020.2.1	Tomato	cytosol	54.85	55.39
KRG96268	Soybean	cytosol	56.31	55.37
KRH72176	Soybean	cytosol	55.34	54.55
KRH32856	Soybean	cytosol	55.1	54.05
PGSC0003DMT400054947	Potato	cytosol	38.59	52.65
HORVU2Hr1G123130.1	Barley	cytosol	5.83	52.17
GSMUA_Achr5P01000_001	Banana	cytosol	44.9	52.11
GSMUA_Achr8P30400_001	Banana	cytosol	45.15	50.68
GSMUA_Achr10P...	Banana	cytosol	44.42	50.14
GSMUA_Achr11P...	Banana	cytosol	45.39	50.13
TraesCS6D01G367100.1	Wheat	cytosol	47.82	46.9
EES06927	Sorghum	cytosol	47.82	46.46
OQU85086	Sorghum	cytosol	48.06	46.37
TraesCS6B01G421900.1	Wheat	cytosol	46.84	45.95
TraesCS6D01G367600.1	Wheat	cytosol	47.09	45.86
TraesCS6B01G421400.1	Wheat	cytosol	46.36	45.48
Os04t0686000-01	Rice	cytosol	45.39	45.28
TraesCS6A01G382300.1	Wheat	cytosol	46.36	45.26
TraesCS6B01G420600.1	Wheat	cytosol	46.12	45.24
TraesCS6A01G382800.1	Wheat	cytosol	45.87	44.79
Os02t0539200-01	Rice	cytosol	47.09	43.89
Os01t0865700-00	Rice	plastid	42.96	43.49
HORVU6Hr1G089560.1	Barley	plastid	47.09	43.02
HORVU6Hr1G089590.1	Barley	plastid	47.09	42.92
EES03937	Sorghum	plastid	42.48	42.89
Zm00001d042738_P001	Maize	cytosol	42.48	42.89
Zm00001d016730_P001	Maize	cytosol	45.39	42.89
TraesCS3D01G370000.1	Wheat	cytosol	43.2	42.58
TraesCS3B01G409400.1	Wheat	cytosol	42.96	42.45
HORVU3Hr1G083500.1	Barley	cytosol	42.48	42.37
TraesCS3A01G376900.1	Wheat	cytosol	42.96	42.34
EES13136	Sorghum	cytosol	43.45	42.02
TraesCS2B01G314500.1	Wheat	cytosol	43.2	41.3
TraesCS2A01G298000.1	Wheat	cytosol	42.96	41.07
TraesCS2D01G296100.1	Wheat	cytosol	42.72	40.84
Zm00001d003745_P001	Maize	nucleus	44.17	40.62
HORVU0Hr1G003810.1	Barley	cytosol	42.23	40.37
KXG26241	Sorghum	cytosol	44.9	40.04
Zm00001d001769_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	37.62	39.54
CDY47911	Canola	cytosol	40.29	39.34
CDY08490	Canola	cytosol	40.05	37.33
CDY53920	Canola	cytosol	39.32	37.16
CDY67531	Canola	cytosol	40.29	37.14
CDY01063	Canola	cytosol	39.32	36.82
CDX73849	Canola	cytosol	39.56	34.9
TraesCSU01G036400.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	35.68	34.43
TraesCS2B01G601300.1	Wheat	cytosol	35.44	34.19
TraesCS2D01G594700.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	35.44	34.19
HORVU2Hr1G123050.1	Barley	cytosol	25.97	31.85
TraesCS6B01G209000.1	Wheat	cytosol	32.28	31.44
TraesCS6A01G176800.1	Wheat	cytosol	32.77	31.25
TraesCS6D01G167300.1	Wheat	cytosol	32.52	30.95
CDX99233	Canola	cytosol, peroxisome, plastid	31.31	30.64
HORVU6Hr1G034250.1	Barley	cytosol, nucleus, peroxisome	32.04	30.48
CDX95458	Canola	cytosol	30.83	30.46
CDY50158	Canola	cytosol	30.58	30.22
GSMUA_Achr9P29630_001	Banana	cytosol	45.15	30.1
KXG23010	Sorghum	cytosol	33.01	29.96
CDX92328	Canola	cytosol	30.58	29.79
Os12t0161100-00	Rice	cytosol	31.55	29.61
CDY16513	Canola	cytosol	30.34	29.55
CDY59286	Canola	cytosol	30.34	29.55
CDY27655	Canola	mitochondrion	30.34	28.54
CDY50319	Canola	cytosol	29.37	28.34
CDY16432	Canola	cytosol	29.37	28.27
CDX99694	Canola	mitochondrion	29.85	28.08
CDX92262	Canola	cytosol	26.46	26.39
CDX74232	Canola	cytosol, extracellular, mitochondrion, plastid	23.3	26.09
CDX92016	Canola	mitochondrion	23.3	26.09
CDY08864	Canola	cytosol	26.21	25.78
CDX84538	Canola	cytosol	25.73	25.3
CDX99325	Canola	cytosol	25.97	25.3
CDY71041	Canola	cytosol	24.27	24.21
CDY51529	Canola	mitochondrion	21.84	24.0
CDX75980	Canola	cytosol	24.51	23.82
CDX82332	Canola	cytosol	24.27	23.58
CDY28714	Canola	mitochondrion	21.36	23.47
CDY69247	Canola	cytosol	24.03	22.35
CDY53333	Canola	cytosol	24.03	22.15
CDY18670	Canola	cytosol	23.79	22.12
CDX83098	Canola	cytosol	23.54	21.9
Zm00001d023480_P001	Maize	cytosol	29.37	21.65

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078HRF5	UniProt:A0A078HRF5	InterPro:ARM-like
InterPro:ARM-type_fold	EnsemblPlants:CDY40422	ProteinID:CDY40422	ProteinID:CDY40422.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00069632001	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF65	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0002543E61	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

BnaA04g20950DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078HRF5]

Coordinates

chrLK032470:+:64563..65902

Molecular Weight (calculated)

46180.6 Da

IEP (calculated)

8.323

GRAVY (calculated)

-0.072

Length

412 amino acids

Sequence
(BLAST)

001: MDEEIEIPPF FLCPISLEIM KDPVIVSTGI TYDRDSIEKW LFSGKKNSCP VTKQDITDAD LTPNHTLRRL IQSWCTLNAS YGVERFPTPR PPICKSEIEK
101: LIKDSASSHQ NQVKCLKRLR QIVSENKTNK RCLEAAGVPE FLATIVSNNE SENVFDSSMS LTDEALSLLY HLETSETVLK NLLNNKKGRD IVSSLIKIMQ
201: RGMYESRAYA TLLLKNILEV AEPMHIMNLK PSVFTEVVQI LDDRISNKAT KAALHILVNI CPWGRNRHKA VEAGAISMMI ELLMDESFSS DRRGPEMAMV
301: VLDLLCQCAE GRAEFLNHGA AIAVVCKKIL RISQTASDRA VRVLLSVGRF CATPSLLHEM LQLGVVSKLC LVLQVNCGSK TKEKAKELLK LHARVWKDSP
401: CLPRNMILAY PS

Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)

001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C

Arabidopsis Description

PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.