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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX89437
CDY03368

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G35930.1 CDX89437 AT4G25200.1 21798944
AT2G35930.1 CDY03368 AT4G25200.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX84587 Canola cytosol 96.57 96.33
CDY40422 Canola cytosol 91.67 90.78
AT2G35930.1 Thale cress cytosol 91.18 90.51
CDY32070 Canola cytosol 91.18 90.29
CDX75084 Canola cytosol 89.46 89.9
CDX84168 Canola cytosol 88.73 89.16
CDX95337 Canola cytosol 81.86 81.66
CDY59599 Canola cytosol 81.86 81.66
CDX78096 Canola cytosol 77.45 81.23
CDY23218 Canola cytosol 78.19 80.56
VIT_08s0105g00190.t01 Wine grape cytosol, plastid, vacuole 60.29 59.85
VIT_08s0105g00180.t01 Wine grape cytosol, plastid, vacuole 60.05 59.61
KRH68014 Soybean cytosol 59.31 57.62
GSMUA_Achr7P03220_001 Banana cytosol 43.38 57.1
PGSC0003DMT400054949 Potato cytosol 56.62 56.9
PGSC0003DMT400055049 Potato cytosol, nucleus, plasma membrane 56.37 56.65
Solyc01g007040.2.1 Tomato cytosol, nucleus, vacuole 24.75 56.42
KRH35744 Soybean cytosol 57.84 56.32
Solyc01g007000.2.1 Tomato cytosol, nucleus, vacuole 56.37 56.23
PGSC0003DMT400055050 Potato cytosol 53.68 55.87
KRH72176 Soybean cytosol 56.86 55.5
PGSC0003DMT400055045 Potato cytosol 28.68 55.45
Solyc01g007030.2.1 Tomato cytosol 28.68 55.45
Solyc01g007020.2.1 Tomato cytosol 55.39 55.39
KRG96257 Soybean cytosol 56.86 55.37
PGSC0003DMT400055051 Potato cytosol 53.43 55.33
KRH32856 Soybean cytosol 56.86 55.24
Solyc01g007010.2.1 Tomato cytosol 55.15 55.15
KRG96268 Soybean cytosol 56.62 55.13
PGSC0003DMT400054948 Potato cytosol 38.48 55.09
PGSC0003DMT400054947 Potato cytosol 38.97 52.65
GSMUA_Achr5P01000_001 Banana cytosol 45.59 52.39
HORVU2Hr1G123130.1 Barley cytosol 5.88 52.17
GSMUA_Achr11P... Banana cytosol 46.08 50.4
GSMUA_Achr8P30400_001 Banana cytosol 44.85 49.86
GSMUA_Achr10P... Banana cytosol 44.36 49.59
TraesCS6D01G367100.1 Wheat cytosol 47.06 45.71
TraesCS6D01G367600.1 Wheat cytosol 47.06 45.39
Os04t0686000-01 Rice cytosol 45.83 45.28
TraesCS6B01G421900.1 Wheat cytosol 46.32 45.0
EES06927 Sorghum cytosol 46.57 44.81
TraesCS6A01G382300.1 Wheat cytosol 46.32 44.79
TraesCS6B01G421400.1 Wheat cytosol 46.08 44.76
OQU85086 Sorghum cytosol 46.81 44.73
TraesCS6B01G420600.1 Wheat cytosol 45.83 44.52
Os01t0865700-00 Rice plastid 43.63 43.73
EES03937 Sorghum plastid 43.63 43.63
TraesCS6A01G382800.1 Wheat cytosol 45.1 43.6
Zm00001d042738_P001 Maize cytosol 43.38 43.38
Os02t0539200-01 Rice cytosol 46.81 43.21
TraesCS3D01G370000.1 Wheat cytosol 44.12 43.06
TraesCS3B01G409400.1 Wheat cytosol 43.87 42.93
HORVU3Hr1G083500.1 Barley cytosol 43.38 42.86
TraesCS3A01G376900.1 Wheat cytosol 43.87 42.82
HORVU6Hr1G089560.1 Barley plastid 46.81 42.35
HORVU6Hr1G089590.1 Barley plastid 46.81 42.26
Zm00001d016730_P001 Maize cytosol 44.85 41.97
EES13136 Sorghum cytosol 43.14 41.31
HORVU0Hr1G003810.1 Barley cytosol 43.63 41.3
TraesCS2B01G314500.1 Wheat cytosol 43.63 41.3
TraesCS2A01G298000.1 Wheat cytosol 43.38 41.07
TraesCS2D01G296100.1 Wheat cytosol 43.14 40.84
Zm00001d003745_P001 Maize nucleus 43.63 39.73
CDY47911 Canola cytosol 40.44 39.1
Zm00001d001769_P001 Maize cytosol, endoplasmic reticulum, peroxisome 37.25 38.78
KXG26241 Sorghum cytosol 43.87 38.74
CDY53920 Canola cytosol 39.46 36.93
CDY67531 Canola cytosol 40.44 36.91
CDY08490 Canola cytosol 39.95 36.88
CDY01063 Canola cytosol 39.22 36.36
CDX73849 Canola cytosol 39.71 34.69
TraesCSU01G036400.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 35.78 34.19
TraesCS2D01G594700.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 35.54 33.96
TraesCS2B01G601300.1 Wheat cytosol 35.29 33.72
HORVU2Hr1G123050.1 Barley cytosol 25.74 31.25
CDX95458 Canola cytosol 30.88 30.22
CDX99233 Canola cytosol, peroxisome, plastid 31.13 30.17
TraesCS6B01G209000.1 Wheat cytosol 31.13 30.02
CDY50158 Canola cytosol 30.64 29.98
TraesCS6A01G176800.1 Wheat cytosol 31.62 29.86
CDX92328 Canola cytosol 30.88 29.79
GSMUA_Achr9P29630_001 Banana cytosol 45.1 29.77
HORVU6Hr1G034250.1 Barley cytosol, nucleus, peroxisome 31.37 29.56
TraesCS6D01G167300.1 Wheat cytosol 31.37 29.56
CDY16513 Canola cytosol 30.64 29.55
CDY59286 Canola cytosol 30.64 29.55
KXG23010 Sorghum cytosol 32.11 28.85
CDY27655 Canola mitochondrion 30.88 28.77
Os12t0161100-00 Rice cytosol 30.64 28.47
CDX99694 Canola mitochondrion 30.39 28.31
CDY50319 Canola cytosol 28.68 27.4
CDY16432 Canola cytosol 28.68 27.34
CDX92262 Canola cytosol 26.47 26.15
CDX74232 Canola cytosol, extracellular, mitochondrion, plastid 23.28 25.82
CDX92016 Canola mitochondrion 23.28 25.82
CDX99325 Canola cytosol 25.74 24.82
CDY08864 Canola cytosol 25.49 24.82
CDX84538 Canola cytosol 25.25 24.58
CDY71041 Canola cytosol 24.75 24.46
CDY51529 Canola mitochondrion 22.3 24.27
CDX75980 Canola cytosol 25.0 24.06
CDX82332 Canola cytosol 25.0 24.06
CDY28714 Canola mitochondrion 21.57 23.47
CDY69247 Canola cytosol 23.53 21.67
CDY53333 Canola cytosol 23.53 21.48
CDY18670 Canola cytosol 23.28 21.44
CDX83098 Canola cytosol 23.04 21.22
Zm00001d023480_P001 Maize cytosol 28.68 20.93
Protein Annotations
Gene3D:1.25.10.10Gene3D:3.30.40.10MapMan:35.1GO:A0A078CS59InterPro:ARM-likeInterPro:ARM-type_fold
EnsemblPlants:CDX79645ProteinID:CDX79645ProteinID:CDX79645.1GO:GO:0003674GO:GO:0003824GO:GO:0004842
GO:GO:0005488GO:GO:0006464GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016567
GO:GO:0016740GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00132431001InterPro:IPR003613InterPro:IPR011989InterPro:IPR013083
PFAM:PF04564PFscan:PS51698PANTHER:PTHR22849PANTHER:PTHR22849:SF65SMART:SM00504SUPFAM:SSF48371
SUPFAM:SSF57850UniPathway:UPA00143UniParc:UPI0004EC2B1CInterPro:Ubox_domainInterPro:Znf_RING/FYVE/PHDSEG:seg
Description
BnaC03g19810D
Coordinates
chrLK031818:-:1327649..1329017
Molecular Weight (calculated)
45501.9 Da
IEP (calculated)
8.482
GRAVY (calculated)
-0.005
Length
408 amino acids
Sequence
(BLAST)
001: MDEEIEIPPF FLCPISLEIM KDPVIVSTGI TYDRDSIEKW LFSGKKNSCP VTKQDITDAD LTPNHTLRRL IQSWCTLNAS YGVERIPTPR SPICKSEIEK
101: LIKDSASSHK NQVMCLKRLR QIVSENATNK RCLEVAGVPE FLATIISNNG FDSSMSLSDE ALSLLYHLES SETVLKNLLN NKKGGNIVKS LTKIMQRGIY
201: ESRAYATLLL KNILEVADPM QIMTLKPSVF TEVVQILDDR ISHKATKAAM HILVTTCPWG RNRHKAVEAG VISVIIELLL DESFSSDRRG PEMAMVVLDM
301: LCQCAEGRAE FLNHGAAIAV VCKKILRVSQ TASDRAVRVL LSVGRFCATP ALLQEMLQLG VVEKMFLVLQ VSCGSKTKEK AKELLKLHAR VWKDSPCLPR
401: NMILAYPS
Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)
001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
Arabidopsis Description
PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.