Factsheet for Os04t0686000-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0827500-01	golgi
Os01t0827600-01	golgi
Os02t0758000-01
Os05t0473500-01	golgi
Os06t0219500-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35930.1	Os02t0758000-01	AT4G25200.1	21798944
AT2G35930.1	Os06t0219500-00	AT4G25200.1	21798944
AT3G52450.1	Os01t0827500-01	AT1G07000.1	23170036
AT3G52450.1	Os01t0827600-01	AT1G07000.1	23170036
AT3G52450.1	Os05t0473500-01	AT1G07000.1	23170036
AT3G52450.1	Os01t0827500-01	AT1G07000.1	23170036
AT3G52450.1	Os01t0827600-01	AT1G07000.1	23170036
AT3G52450.1	Os05t0473500-01	AT1G07000.1	23170036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G123130.1	Barley	cytosol	8.72	78.26
EES13136	Sorghum	cytosol	77.48	75.12
Zm00001d001769_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	66.59	70.15
TraesCS2B01G601300.1	Wheat	cytosol	65.13	63.0
TraesCSU01G036400.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	64.89	62.76
TraesCS2D01G594700.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	64.41	62.3
HORVU2Hr1G123050.1	Barley	cytosol	47.46	58.33
GSMUA_Achr7P03220_001	Banana	cytosol	42.13	56.13
GSMUA_Achr5P01000_001	Banana	cytosol	46.25	53.8
Os01t0865700-00	Rice	plastid	52.3	53.07
VIT_08s0105g00180.t01	Wine grape	cytosol, plastid, vacuole	49.39	49.63
Solyc01g007030.2.1	Tomato	cytosol	25.18	49.29
PGSC0003DMT400055045	Potato	cytosol	25.18	49.29
VIT_08s0105g00190.t01	Wine grape	cytosol, plastid, vacuole	48.91	49.15
Os02t0539200-01	Rice	cytosol	52.54	49.09
VIT_06s0009g00320.t01	Wine grape	cytosol	47.94	47.83
KRH22633	Soybean	cytosol, nucleus	45.76	46.9
KRH26691	Soybean	cytosol	43.34	46.25
AT2G35930.1	Thale cress	cytosol	46.0	46.23
CDX84587	Canola	cytosol	45.52	45.97
CDY32070	Canola	cytosol	45.76	45.87
CDX79645	Canola	cytosol	45.28	45.83
CDX84168	Canola	cytosol	45.04	45.81
Bra023044.1-P	Field mustard	cytosol	45.28	45.72
CDX78096	Canola	cytosol	42.86	45.5
CDX95337	Canola	cytosol	45.04	45.48
CDY40422	Canola	cytosol	45.28	45.39
Bra017278.1-P	Field mustard	cytosol	45.28	45.39
KRG96257	Soybean	cytosol	46.0	45.35
CDX75084	Canola	cytosol	44.55	45.32
Solyc01g007000.2.1	Tomato	cytosol, nucleus, vacuole	44.79	45.23
KRH72176	Soybean	cytosol	45.76	45.22
KRG96268	Soybean	cytosol	45.76	45.11
KRH35744	Soybean	cytosol	45.76	45.11
PGSC0003DMT400054949	Potato	cytosol	44.31	45.07
PGSC0003DMT400055049	Potato	cytosol, nucleus, plasma membrane	44.31	45.07
KRH32856	Soybean	cytosol	45.76	45.0
Solyc11g068920.1.1	Tomato	cytosol	43.83	44.8
Bra005309.1-P	Field mustard	cytosol	41.89	44.7
CDY23218	Canola	cytosol	42.86	44.7
CDY59599	Canola	cytosol	44.07	44.5
Solyc01g007020.2.1	Tomato	cytosol	43.83	44.36
KRH25324	Soybean	cytosol	38.98	44.35
PGSC0003DMT400055050	Potato	cytosol	41.89	44.13
Solyc01g009330.1.1	Tomato	cytosol	45.52	44.13
PGSC0003DMT400050493	Potato	cytosol	43.1	44.06
KRH68014	Soybean	cytosol	44.79	44.05
PGSC0003DMT400055051	Potato	cytosol	41.65	43.65
Solyc01g007010.2.1	Tomato	cytosol	42.86	43.38
Bra012803.1-P	Field mustard	cytosol	44.31	43.26
AT3G52450.1	Thale cress	cytosol	45.04	42.76
Bra033430.1-P	Field mustard	cytosol	43.58	42.45
Bra006925.1-P	Field mustard	cytosol	44.07	41.84
PGSC0003DMT400054947	Potato	cytosol	30.27	41.39
PGSC0003DMT400054948	Potato	cytosol	28.33	41.05
PGSC0003DMT400038197	Potato	cytosol	44.31	40.31
Solyc01g007040.2.1	Tomato	cytosol, nucleus, vacuole	16.71	38.55
Os12t0161100-00	Rice	cytosol	35.84	33.71
Os04t0589700-01	Rice	cytosol	31.96	31.35
Os02t0690600-01	Rice	cytosol	31.96	31.06
Os02t0548700-00	Rice	cytosol, extracellular, plastid	30.99	30.7
GSMUA_Achr9P29630_001	Banana	cytosol	45.04	30.1
Os02t0738200-01	Rice	mitochondrion	33.17	30.04
Os06t0248500-00	Rice	mitochondrion	32.2	29.36
Os04t0437300-01	Rice	cytosol	28.81	27.93
Os03t0240600-01	Rice	plastid	29.54	27.42
Os03t0232600-01	Rice	cytosol	29.54	26.58
Os04t0418500-01	Rice	plastid	26.39	24.17
Os05t0439400-01	Rice	plasma membrane	25.42	23.23
Os02t0540700-00	Rice	plastid	27.84	22.77

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:4337468	EMBL:AK108418	InterPro:ARM-like
InterPro:ARM-type_fold	ProteinID:BAF16238.1	ProteinID:BAS91734.1	ProteinID:CAD41926.1	ncoils:Coil	ProteinID:EAZ32482.1
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613
InterPro:IPR011989	InterPro:IPR013083	EnsemblPlantsGene:Os04g0686000	EnsemblPlants:Os04t0686000-01	PFAM:PF04564	PFscan:PS51698
PANTHER:PTHR22849	PANTHER:PTHR22849:SF11	UniProt:Q7XTM1	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI00001B0E20	InterPro:Ubox_domain	RefSeq:XP_015634197.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

plant U-box-containing protein 32, U-box protein 32Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os04t0686000-01)

Coordinates

chr4:-:35054571..35056161

Molecular Weight (calculated)

44548.9 Da

IEP (calculated)

6.947

GRAVY (calculated)

0.032

Length

413 amino acids

Sequence
(BLAST)

001: MEEQQQVEVE VEVPSYFVCP ISLQIMRDPV TLPTGITYDR DGIERWLLTA GTCPLTKQPV PPDCDPTPNH TLRRLIQSWC ALHADHGVDL VPTPKPPADR
101: ARVADLVSRL RAATSSAALL DALRELRDVA AESERNRKLL AAVPGAVDVL AAVVVASCRD AKAACDEALE IVCSLELSER CLARLVERNE ELVDALVATL
201: QRTNTTSRAH AALLLEAVTA VMPSNRLVSL PEEVFGEAVQ LLRDRVSSPA TRAALHVLVG TTSWGRNRVK AVDAGAVAVL VDMLLDGPVE RRGCELALAA
301: LDRMCGCAEG RAALVSHGAG VAVVGRKVLR VSEVASEKAV RVLRSVARHA ATAAVVQEMG QTGAVEKLCV VAQSEQCGER TRERARETLR LHARAWRNSP
401: CLQPHLQALY PSC

Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)

001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C

Arabidopsis Description

PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.