Factsheet for Os04t0437300-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G076490.1	Barley	mitochondrion	18.31	89.66
TraesCS2A01G307000.1	Wheat	cytosol	73.71	81.14
TraesCS2D01G305400.1	Wheat	cytosol	76.06	81.0
TraesCS2B01G323600.1	Wheat	cytosol	76.06	81.0
OQU81614	Sorghum	cytosol	73.0	78.14
Zm00001d003624_P001	Maize	cytosol	73.0	77.75
GSMUA_Achr2P20690_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	50.0	53.12
GSMUA_Achr7P23310_001	Banana	cytosol, peroxisome, plastid	44.37	47.49
VIT_04s0044g01460.t01	Wine grape	cytosol	41.31	44.11
KRH53906	Soybean	cytosol	37.32	40.36
KRH64033	Soybean	cytosol	36.38	39.44
KRH40934	Soybean	cytosol	35.92	39.43
KRH59579	Soybean	cytosol	34.27	39.04
Solyc05g056500.1.1	Tomato	cytosol	34.98	37.16
PGSC0003DMT400060272	Potato	cytosol	34.74	36.63
Os02t0548700-00	Rice	cytosol, extracellular, plastid	30.28	30.94
Os04t0686000-01	Rice	cytosol	27.93	28.81
Os01t0865700-00	Rice	plastid	27.23	28.5
Os02t0539200-01	Rice	cytosol	27.7	26.7
Os04t0418500-01	Rice	plastid	27.46	25.94
Os03t0240600-01	Rice	plastid	25.82	24.72
Os02t0540700-00	Rice	plastid	28.87	24.36
Os06t0248500-00	Rice	mitochondrion	25.82	24.28
Os03t0232600-01	Rice	cytosol	26.06	24.18
Os02t0690600-01	Rice	cytosol	23.0	23.06
Os02t0738200-01	Rice	mitochondrion	24.65	23.03
Os12t0161100-00	Rice	cytosol	23.47	22.78
Os05t0439400-01	Rice	plasma membrane	23.94	22.57
Os04t0589700-01	Rice	cytosol	22.3	22.57

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:4335911	InterPro:ARM-like	InterPro:ARM-type_fold
ProteinID:BAF14771.1	ProteinID:BAS89315.1	ProteinID:CAD40819.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	EnsemblPlantsGene:Os04g0437300
EnsemblPlants:Os04t0437300-01	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF103	UniProt:Q7XV59
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000021C662	InterPro:Ubox_domain	RefSeq:XP_015634590.1
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

plant U-box-containing protein 38, U-box protein 38Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os04t0437300-01)

Coordinates

chr4:+:21745662..21747557

Molecular Weight (calculated)

43939.5 Da

IEP (calculated)

8.460

GRAVY (calculated)

0.212

Length

426 amino acids

Sequence
(BLAST)

001: MSIPHLFRCP ISLDIFTDPV TLCTGQTYDR PCIERWLAAG HRTCPVTMQP LGDATALVPN RTLRHLIERW LSTDQHHNHH LPEPAAPAAE AEADAEEPSL
101: AALKRCLQQP DAAGAGKAKV GALKKVMTLA SESDVGRACM VQLGFLPVLL QLVFHAPAAP PSERRGGEAA VVEELALQCA LGLMPSSAAS PQLGCLNVLK
201: SEASLASLVA LLERGRGRTR AGLCRLLEAV ATAAATRELA LVVAASPRVW QALLPLLRHD GPAPTPAPPH DAHAASDAAV RAVAAICASE PARGGAIHHG
301: AVGALLGHLS WAASGKCASG GCAGAVPSAL AAVEALAASE AGRMAVARAP GGTRALVRHV FMMNSSNDGS EHAVAALLAV CRESRAARSE AAGAGVVTLL
401: LLLLQSQCGA RAKAKARSLL KLLKSM

Best Arabidopsis Sequence Match ( AT3G19380.1 )
(BLAST)

001: MPRNIEPLDL GIQIPYHFRC PISLELMQDP VTVCTGQTYD RASIESWVSI GNNTTCPVTR APLSDFTLIP NHTLRRLIQE WCVANRSNGV ERIPTPKQPA
101: DPTSVRALLS QASAITGTHV SVRSRAAALR RLRGFARDSD KNRVLIAAHN ATEILIKILF SETTSSELVS ESLALLVMLP ITEPNQFVSI SSDPGRVEFL
201: TRLLFDSSIE TRVNAAALIE IVSTGTKSAD LKGSISNSES VFEGVLDLLR NPISSRRALK IGIKTLFALC SVKSTRHIAI TAGAPEILID RLAADFDRCD
301: TERALATVEL LCRTPEGCAA FGEHALTVPL LVKTILRVSD RATEYAAGAL LALCTAEERW REEAAGAGVV VQLLLMVQSE CTERAKKKAQ KLLKLLRDSW
401: PDYNSFANSD DFGCSSQVVP F

Arabidopsis Description

PUB25U-box domain-containing protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT79]
SUBAcon: [golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.