Factsheet for PGSC0003DMT400060272

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g056500.1.1	Tomato	cytosol	92.82	93.52
KRH64033	Soybean	cytosol	50.74	52.16
KRH53906	Soybean	cytosol	49.75	51.02
VIT_04s0044g01460.t01	Wine grape	cytosol	50.0	50.63
KRH59579	Soybean	cytosol	46.29	50.0
KRH40934	Soybean	cytosol	47.52	49.48
HORVU2Hr1G076490.1	Barley	mitochondrion	9.9	45.98
GSMUA_Achr7P23310_001	Banana	cytosol, peroxisome, plastid	41.34	41.96
GSMUA_Achr2P20690_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	39.6	39.9
TraesCS2A01G307000.1	Wheat	cytosol	36.63	38.24
TraesCS2B01G323600.1	Wheat	cytosol	37.38	37.75
TraesCS2D01G305400.1	Wheat	cytosol	37.13	37.5
OQU81614	Sorghum	cytosol	36.63	37.19
TraesCS7A01G399900.1	Wheat	extracellular, vacuole	35.15	37.08
Zm00001d003624_P001	Maize	cytosol	36.63	37.0
TraesCS7B01G300000.1	Wheat	cytosol, extracellular, nucleus	34.41	36.2
TraesCS7D01G393700.1	Wheat	extracellular, vacuole	33.91	35.86
HORVU7Hr1G093780.1	Barley	cytosol, endoplasmic reticulum, extracellular	34.41	35.55
Os04t0437300-01	Rice	cytosol	36.63	34.74
PGSC0003DMT400066588	Potato	cytosol	27.72	26.99
PGSC0003DMT400065698	Potato	cytosol	27.48	26.43
PGSC0003DMT400058621	Potato	cytosol, mitochondrion	25.74	23.06
PGSC0003DMT400002079	Potato	cytosol	23.51	22.73
PGSC0003DMT400073836	Potato	cytosol	23.02	22.2
PGSC0003DMT400075778	Potato	mitochondrion	23.76	21.72
PGSC0003DMT400050493	Potato	cytosol	21.29	21.29
PGSC0003DMT400054948	Potato	cytosol	14.85	21.05
PGSC0003DMT400012566	Potato	cytosol	23.27	20.94
PGSC0003DMT400054949	Potato	cytosol	20.79	20.69
PGSC0003DMT400054946	Potato	cytosol	21.53	20.67
PGSC0003DMT400038196	Potato	cytosol	21.29	20.57
PGSC0003DMT400004594	Potato	cytosol	20.54	20.39
PGSC0003DMT400055049	Potato	cytosol, nucleus, plasma membrane	20.3	20.2
PGSC0003DMT400038197	Potato	cytosol	22.52	20.04
PGSC0003DMT400055050	Potato	cytosol	19.06	19.64
PGSC0003DMT400055051	Potato	cytosol	19.06	19.54
PGSC0003DMT400015179	Potato	cytosol	19.06	19.11
PGSC0003DMT400055045	Potato	cytosol	9.41	18.01
PGSC0003DMT400054947	Potato	cytosol	10.64	14.24

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:107060302	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:M1C5I2	PFAM:PF04564	EnsemblPlantsGene:PGSC0003DMG400023445
PGSC:PGSC0003DMG400023445	EnsemblPlants:PGSC0003DMT400060272	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF103	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000294FF5B	InterPro:Ubox_domain	RefSeq:XP_015163512.1	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

Spotted leaf protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023445]

Coordinates

chr5:+:51923658..51925755

Molecular Weight (calculated)

45728.3 Da

IEP (calculated)

5.722

GRAVY (calculated)

0.091

Length

404 amino acids

Sequence
(BLAST)

001: MKQPEIGIPI LFRCPISLDL FKDPVTLCTG QTYDRSSIEK WLSCGNSTCP VTMQKLHDST IVPNTTLRHL IDRWLQINCS HGYDLDYFQT VDDSFVVLKH
101: NLQSMESTLE AKVEALEKVI ALSKDLPFEN CPLIQLDFFQ MILELALENA DESLNFEGNI MFVEKALVCG LKLLPFSDLG TLNMLKQDES KFTNFLILFK
201: KGSFMIKKSL CHYIVAISSS LQSKELLVML GKSKILVQEL VHLIENKLDG YEESIKALSA LSIVEQNREV IAKENTVKAL ITYIVNAPKC EYRSLFGLVM
301: AMKTIETLLV VESAKEDVLD HPNGISEIVK MVFRVSSDNE ASESAMNCLI ILCQDFMNAR EEAICCGILT KLLLLLQSQC SERTKNKARM LLKLLRSMCN
401: RDQK

Best Arabidopsis Sequence Match ( AT1G49780.1 )
(BLAST)

001: MPGNLEPLDL GIQIPYHFRC PISLDLMSDP VTISTGQTYD RTSIDSWIAM GNTTCPVTRV ALSDFTLIPN HTLRRLIQEW CVANRSNGVE RIPTPKQPAD
101: PISVRSLLSQ ASAITGTHVS VRSRAAAIRR LRGLARDSEK NRVLIAGHNA REILVRILFA DIETTSLSSE LVSESLALLV LLHMTETECE AVASDPSRVG
201: FMTRLLFDSS IEIRVNAAAL IEMVLTGAKS MDLKLIISGS DSIFEGVLDL LKNPISSRRA LKIGIKAIFA LCLVKQTRHL AISAGAPGIL IDRLAADFDR
301: CDTERGLATV ELLCRLPEGC AAFGEHALTV PLMVKTILRV SDRATEYAAG ALLALCTAEE RCRDEAAAAG LVTQLLLLVQ SDCTERAKRK AQMLLKLLRD
401: SWPDDSTVHS DDFNRSEVAP F

Arabidopsis Description

PUB26U-box domain-containing protein 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA4]
SUBAcon: [cytoskeleton,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.