Factsheet for TraesCS7D01G393700.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 4
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
golgi 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	nucleus, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G399900.1	Wheat	extracellular, vacuole	94.24	93.99
TraesCS7B01G300000.1	Wheat	cytosol, extracellular, nucleus	92.93	92.45
HORVU7Hr1G093780.1	Barley	cytosol, endoplasmic reticulum, extracellular	91.36	89.26
GSMUA_Achr7P23310_001	Banana	cytosol, peroxisome, plastid	44.76	42.96
GSMUA_Achr2P20690_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	43.46	41.4
TraesCS2D01G305400.1	Wheat	cytosol	41.36	39.5
VIT_04s0044g01460.t01	Wine grape	cytosol	40.31	38.6
KRH53906	Soybean	cytosol	37.7	36.55
KRH40934	Soybean	cytosol	36.91	36.34
KRH64033	Soybean	cytosol	37.17	36.13
KRH59579	Soybean	cytosol	34.55	35.29
Solyc05g056500.1.1	Tomato	cytosol	35.6	33.92
PGSC0003DMT400060272	Potato	cytosol	35.86	33.91
TraesCS3D01G370000.1	Wheat	cytosol	28.8	26.32
TraesCS6D01G237900.1	Wheat	extracellular	27.49	25.8
TraesCS2D01G594700.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	27.49	24.59
TraesCS4D01G237600.1	Wheat	cytosol	28.8	23.97
TraesCS6D01G367600.1	Wheat	cytosol	26.44	23.88
TraesCS2D01G296700.1	Wheat	cytosol, mitochondrion, plastid	27.49	23.81
TraesCS6D01G367100.1	Wheat	cytosol	25.39	23.1
TraesCS2D01G296100.1	Wheat	cytosol	25.65	22.74
TraesCS7D01G201600.1	Wheat	mitochondrion	25.92	22.4
TraesCS2D01G449900.1	Wheat	cytosol	23.56	21.53
TraesCS6D01G292200.1	Wheat	mitochondrion	25.39	21.37
TraesCS4D01G229900.1	Wheat	mitochondrion	24.35	21.14
TraesCS6D01G167300.1	Wheat	cytosol	23.82	21.02
TraesCS6D01G251200.1	Wheat	cytosol	23.56	20.83
TraesCS1D01G274600.1	Wheat	mitochondrion	23.56	19.87

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF103	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS7D01G393700	EnsemblPlants:TraesCS7D01G393700.1	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
TIGR:cd16664	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7D:+:509200255..509201403

Molecular Weight (calculated)

40548.0 Da

IEP (calculated)

8.638

GRAVY (calculated)

0.351

Length

382 amino acids

Sequence
(BLAST)

001: MMLIPEVFLC PISLDLMSDP VTLLPTAQTY DRPSIRRWLA AGHRTCPVTM RPLPHHTSGL LAPNRTLKHL IDRWLLLADL ALPTLRDNLL DAAAATDSAP
101: MVAAVETLRI VRSLSPPGFC ALLLRLLMVR SSGDVLAELA LDCLLASPST RELADALQEE KKLPSSFAFL LRQGSPKVKT ALCRLIHTVG AVAVDAVGAL
201: GRSEPVMGAL AALVRDDTAG GASDAALRAM CSLCSSDQAS REAAVTAGAV DALLSYISSG GSRKRPSSCA LWTLALETLE LVLVSVDAGR QAMYARPGAT
301: AVLVKMVFMV PSRQDRVGGC GSEHAIGSLL VACRESAEAR VDAINAGLLT RLLLLLQSQC SPRAKANAMA LLKLLRAIWA RH

Best Arabidopsis Sequence Match ( AT3G19380.1 )
(BLAST)

001: MPRNIEPLDL GIQIPYHFRC PISLELMQDP VTVCTGQTYD RASIESWVSI GNNTTCPVTR APLSDFTLIP NHTLRRLIQE WCVANRSNGV ERIPTPKQPA
101: DPTSVRALLS QASAITGTHV SVRSRAAALR RLRGFARDSD KNRVLIAAHN ATEILIKILF SETTSSELVS ESLALLVMLP ITEPNQFVSI SSDPGRVEFL
201: TRLLFDSSIE TRVNAAALIE IVSTGTKSAD LKGSISNSES VFEGVLDLLR NPISSRRALK IGIKTLFALC SVKSTRHIAI TAGAPEILID RLAADFDRCD
301: TERALATVEL LCRTPEGCAA FGEHALTVPL LVKTILRVSD RATEYAAGAL LALCTAEERW REEAAGAGVV VQLLLMVQSE CTERAKKKAQ KLLKLLRDSW
401: PDYNSFANSD DFGCSSQVVP F

Arabidopsis Description

PUB25U-box domain-containing protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT79]
SUBAcon: [golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.