Factsheet for TraesCS2D01G296700.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

mitochondrion 3
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, plastid
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3B01G567600.1
TraesCS3D01G511300.1
TraesCS4A01G352200.1
TraesCS5B01G519400.1
TraesCS5D01G518700.2
TraesCS6A01G313600.1
TraesCS6B01G343700.1
TraesCS6D01G293000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09800.1	TraesCS3B01G567600.1	AT4G33940.1	21798944
AT5G09800.1	TraesCS3D01G511300.1	AT4G33940.1	21798944
AT5G09800.1	TraesCS4A01G352200.1	AT4G33940.1	21798944
AT5G09800.1	TraesCS5B01G519400.1	AT4G33940.1	21798944
AT5G09800.1	TraesCS5D01G518700.2	AT4G33940.1	21798944
AT5G09800.1	TraesCS6A01G313600.1	AT4G33945.1	21798944
AT5G09800.1	TraesCS6B01G343700.1	AT4G33945.1	21798944
AT5G09800.1	TraesCS6D01G293000.1	AT4G33945.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G298600.1	Wheat	cytosol, mitochondrion, plastid	98.19	98.19
TraesCS2B01G315100.1	Wheat	cytosol	97.96	97.96
HORVU2Hr1G074130.1	Barley	plastid	97.05	82.63
Zm00001d025379_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	80.73	80.18
Os04t0418500-01	Rice	plastid	81.41	79.6
OQU81548	Sorghum	mitochondrion	80.05	78.97
GSMUA_Achr8P30420_001	Banana	mitochondrion	40.36	65.2
GSMUA_Achr6P18140_001	Banana	cytosol	49.66	53.55
GSMUA_Achr10P...	Banana	plastid	45.12	51.82
VIT_04s0044g00870.t01	Wine grape	cytosol	36.96	39.56
KRH53869	Soybean	cytosol	37.19	39.33
VIT_18s0166g00190.t01	Wine grape	plasma membrane	35.37	39.0
PGSC0003DMT400002079	Potato	cytosol	35.83	37.8
KRH43397	Soybean	cytosol	35.6	37.56
KRH59546	Soybean	cytosol	35.37	37.32
CDX84538	Canola	cytosol	35.37	37.23
Bra024318.1-P	Field mustard	cytosol	35.15	36.99
CDY08864	Canola	cytosol	35.15	36.99
Solyc04g071030.1.1	Tomato	cytosol	35.37	36.53
Solyc11g005700.1.1	Tomato	cytosol	34.47	36.19
AT5G09800.1	Thale cress	cytosol	33.33	35.94
AT5G64660.1	Thale cress	cytosol	33.79	35.48
KRH36899	Soybean	cytosol	29.71	35.31
PGSC0003DMT400065698	Potato	cytosol	33.33	35.0
CDX92262	Canola	cytosol	31.97	34.14
TraesCS1D01G274600.1	Wheat	mitochondrion	34.92	34.0
KRH08734	Soybean	mitochondrion	31.75	33.82
CDX75980	Canola	cytosol	32.43	33.73
CDX82332	Canola	cytosol	32.43	33.73
Bra001717.1-P	Field mustard	cytosol	32.2	33.49
CDX99325	Canola	cytosol	31.97	33.33
Bra022347.1-P	Field mustard	cytosol	31.97	33.25
AT3G18710.1	Thale cress	cytosol	30.84	32.77
KRH70331	Soybean	mitochondrion	30.16	32.68
Bra037568.1-P	Field mustard	cytosol	29.93	31.96
CDY71041	Canola	cytosol	29.71	31.72
TraesCS3D01G370000.1	Wheat	cytosol	27.21	28.71
TraesCS2D01G305400.1	Wheat	cytosol	25.85	28.5
TraesCS7D01G393700.1	Wheat	extracellular, vacuole	23.81	27.49
TraesCS6D01G237900.1	Wheat	extracellular	24.94	27.03
TraesCS6D01G367100.1	Wheat	cytosol	25.4	26.67
TraesCS2D01G594700.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	25.62	26.46
TraesCS6D01G367600.1	Wheat	cytosol	25.17	26.24
TraesCS4D01G237600.1	Wheat	cytosol	26.98	25.93
TraesCS6D01G251200.1	Wheat	cytosol	24.49	25.0
TraesCS6D01G292200.1	Wheat	mitochondrion	24.94	24.23
TraesCS7D01G201600.1	Wheat	mitochondrion	24.04	23.98
TraesCS4D01G229900.1	Wheat	mitochondrion	23.81	23.86
TraesCS2D01G296100.1	Wheat	cytosol	23.13	23.67
TraesCS6D01G167300.1	Wheat	cytosol	22.45	22.86
TraesCS2D01G449900.1	Wheat	cytosol	21.54	22.73

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF12	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS2D01G296700	EnsemblPlants:TraesCS2D01G296700.1	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
TIGR:cd16664	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr2D:+:379107128..379108717

Molecular Weight (calculated)

45577.0 Da

IEP (calculated)

8.410

GRAVY (calculated)

0.169

Length

441 amino acids

Sequence
(BLAST)

001: MVRKEKTTTG MRLPPQHQGL EVKIPSFFRC PISLDVMRSP VSLCTGVTYD RASIQRWLDS GNTTCPATML PLPSTDLTPN LTLRSLISHW SASAASCSPI
101: AGSAAFFAGP SPAALVRQVA SSGADPSAAL RELAAYLSDD DLDEFEKNAL VGAGSAAETV ASVLRRKGEQ ISVAGAEAAV RVLAAIVALD GIEDANKRRV
201: AAGLAVDAAA SAASLARVLR GGSGLEARID AARLAEFLLA NAGAEAKVAM AESSELVAEL VRLVGPVDEK GGLDKKAMDT GLSCLAAIAG SRRAARADMV
301: RLGAVPAAAR ALHATTEPSS SAKALRILES AVGCAEGRAA LCKDAELTVP AVLDKMMKSG RDGAEAAVAV LWAVCHKYKD RRAAEAAAAS EGGLTRLILL
401: LQSGCSAAAR QMALELLKIY KVNAKSCLAG YDSKTAHIMP F

Best Arabidopsis Sequence Match ( AT5G64660.1 )
(BLAST)

001: MRKDDLCITV PTFFRCPISL DVMKSPVSLC TGVTYDRASI QRWLDGGNNT CPATMQILQN KDFIPNRTLQ RLIEIWSDSV RRRTCVESAE LAAPTRDEIA
101: DAIDRVKIEK EERDDREVLS KIVRFGRESD DNRGFLAGKD DFVKLLVDLI NQVDFETTSA AKSLVVQEAV KILSTIRSKV SDRRRFSNLI LTNGRDRLSV
201: IVYLFKTGNV ELKIDCAGLL EFIAVDAESK LLIAERDGLI TELMKSISKD SDLSLIESSL SCLIAISSPK RVKLNLLREK LIGDVTKLLS DSTSSLSVSV
301: TEKCLKLLEI LASTKEGRSE ICGGDGECLK TVVKKLMKVS TAATEHAVTV LWSVSYLFKE DKALEAVTSV NGVTKILLLL QSNCSPAVRR MLTDLLKVFK
401: VNSRSCLSAY DTKTTHIMPF

Arabidopsis Description

PUB27U-box domain-containing protein 27 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.