Factsheet for VIT_18s0166g00190.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 1
nucleus 1
plasma membrane 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_04s0044g00870.t01	Wine grape	cytosol	55.75	54.13
PGSC0003DMT400002079	Potato	cytosol	52.0	49.76
Solyc04g071030.1.1	Tomato	cytosol	50.25	47.07
GSMUA_Achr8P30420_001	Banana	mitochondrion	31.25	45.79
KRH08734	Soybean	mitochondrion	44.25	42.75
KRH70331	Soybean	mitochondrion	40.5	39.8
GSMUA_Achr10P...	Banana	plastid	37.0	38.54
GSMUA_Achr6P18140_001	Banana	cytosol	37.75	36.92
Zm00001d016719_P001	Maize	cytosol	38.25	35.66
Zm00001d050689_P001	Maize	cytosol	38.0	35.43
TraesCS2D01G296700.1	Wheat	cytosol, mitochondrion, plastid	39.0	35.37
TraesCS2B01G315100.1	Wheat	cytosol	39.0	35.37
TraesCS2A01G298600.1	Wheat	cytosol, mitochondrion, plastid	39.0	35.37
GSMUA_Achr5P01020_001	Banana	cytosol	35.25	35.16
Zm00001d025379_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	38.5	34.68
OQU81548	Sorghum	mitochondrion	38.5	34.45
EES05205	Sorghum	cytosol	39.0	34.44
Os04t0418500-01	Rice	plastid	38.25	33.92
Os02t0540700-00	Rice	plastid	38.25	30.3
HORVU2Hr1G074130.1	Barley	plastid	39.0	30.12
Os05t0439400-01	Rice	plasma membrane	31.75	28.1
HORVU1Hr1G074180.1	Barley	mitochondrion, plastid	31.75	28.04
TraesCS1D01G274600.1	Wheat	mitochondrion	31.5	27.81
TraesCS1A01G274800.1	Wheat	mitochondrion	31.5	27.81
Zm00001d038280_P001	Maize	cytosol	31.25	27.65
KXG22102	Sorghum	mitochondrion	31.5	27.57
TraesCS1B01G284200.1	Wheat	mitochondrion	31.0	27.37
VIT_04s0044g01460.t01	Wine grape	cytosol	25.25	25.31
VIT_08s0105g00180.t01	Wine grape	cytosol, plastid, vacuole	26.0	25.3
VIT_08s0105g00190.t01	Wine grape	cytosol, plastid, vacuole	26.0	25.3
VIT_01s0011g06140.t01	Wine grape	mitochondrion	26.5	23.98
VIT_06s0009g00320.t01	Wine grape	cytosol	23.75	22.95
VIT_08s0105g00200.t01	Wine grape	cytosol	23.25	22.91
VIT_03s0063g00180.t01	Wine grape	cytosol	23.75	22.89
VIT_00s0471g00010.t01	Wine grape	cytosol	25.0	22.37
VIT_06s0009g00370.t01	Wine grape	cytosol	22.25	21.98
VIT_18s0001g08790.t01	Wine grape	cytosol	24.75	21.9

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100251262	wikigene:100251262	MapMan:19.2.2.1.5.2.1	Gene3D:3.30.40.10	EMBL:AM424511
InterPro:ARM-like	InterPro:ARM-type_fold	ProteinID:CAN66628	ProteinID:CAN66628.1	ProteinID:CCB58953	ProteinID:CCB58953.1
UniProt:F6HW89	EMBL:FN596264	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	EntrezGene:LOC100251262	wikigene:LOC100251262
PFAM:PF03224	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF106	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	TIGR:TC59887	TIGR:TC64169	UniParc:UPI000198599D	InterPro:Ubox_domain
ArrayExpress:VIT_18s0166g00190	EnsemblPlantsGene:VIT_18s0166g00190	EnsemblPlants:VIT_18s0166g00190.t01	unigene:Vvi.17612	RefSeq:XP_002264273	RefSeq:XP_002264273.1
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6HW89]

Coordinates

chr18:-:14139015..14140400

Molecular Weight (calculated)

43612.0 Da

IEP (calculated)

8.419

GRAVY (calculated)

0.146

Length

400 amino acids

Sequence
(BLAST)

001: MVRNDLFINI PSFFKCPISL DVMKSPVSLC TGVTYDRSSI QTWLDNGNNT CPATMQILPS KDFVPNHTLQ RLIQVWAQSS AVPSPVVSSR QVGAWVADIE
101: NRRFGALPKI LDYASSSDEN RRFVASLDGF VPVVAGVLGN AGAGIEILEL VVRILDLVMV EKGVKEQIQG LILKSNRDHL SAILLILEKG SSDSKIASAR
201: ILEAIAIDPE SKRSISEREG LLSVLLQLLS SQTDSSSLDS VLSCLIAITV TRQTKTQLVR SGLVQTLAKT LSTSNYPIST TEKSIKLLLT ISNCRDGHQA
301: ICEDPICVAA VVQRMSMKLS SSAVEDAVTV LWSVCYLNRD SKAQEAVAKS TGLTKILLLM QTNCSANVRR MCCDLVKIFR VNSKSCLASY DTKTTHITPY

Best Arabidopsis Sequence Match ( AT5G64660.1 )
(BLAST)

001: MRKDDLCITV PTFFRCPISL DVMKSPVSLC TGVTYDRASI QRWLDGGNNT CPATMQILQN KDFIPNRTLQ RLIEIWSDSV RRRTCVESAE LAAPTRDEIA
101: DAIDRVKIEK EERDDREVLS KIVRFGRESD DNRGFLAGKD DFVKLLVDLI NQVDFETTSA AKSLVVQEAV KILSTIRSKV SDRRRFSNLI LTNGRDRLSV
201: IVYLFKTGNV ELKIDCAGLL EFIAVDAESK LLIAERDGLI TELMKSISKD SDLSLIESSL SCLIAISSPK RVKLNLLREK LIGDVTKLLS DSTSSLSVSV
301: TEKCLKLLEI LASTKEGRSE ICGGDGECLK TVVKKLMKVS TAATEHAVTV LWSVSYLFKE DKALEAVTSV NGVTKILLLL QSNCSPAVRR MLTDLLKVFK
401: VNSRSCLSAY DTKTTHIMPF

Arabidopsis Description

PUB27U-box domain-containing protein 27 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.