Factsheet for VIT_08s0105g00200.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72180	Soybean	cytosol	33.0	57.76
VIT_06s0009g00370.t01	Wine grape	cytosol	56.9	57.04
KRH68013	Soybean	cytosol	40.39	55.41
PGSC0003DMT400054946	Potato	cytosol	51.72	49.88
Solyc01g007050.1.1	Tomato	cytosol	51.72	49.88
GSMUA_Achr11P...	Banana	cytosol	44.58	49.45
CDY47911	Canola	cytosol	50.0	48.1
CDY08490	Canola	cytosol	51.72	47.51
CDY01063	Canola	cytosol	51.48	47.5
Bra038683.1-P	Field mustard	cytosol	50.99	46.31
CDY67531	Canola	cytosol	50.99	46.31
CDY53920	Canola	cytosol	48.77	45.41
Bra034806.1-P	Field mustard	cytosol	51.97	45.18
VIT_08s0105g00190.t01	Wine grape	cytosol, plastid, vacuole	45.32	44.77
VIT_08s0105g00180.t01	Wine grape	cytosol, plastid, vacuole	45.07	44.53
AT3G11840.1	Thale cress	cytosol	49.26	43.86
VIT_06s0009g00320.t01	Wine grape	cytosol	43.84	43.0
CDX73849	Canola	cytosol	49.26	42.83
Bra001424.1-P	Field mustard	cytosol	49.26	42.73
VIT_01s0011g06140.t01	Wine grape	mitochondrion	29.56	27.15
VIT_03s0063g00180.t01	Wine grape	cytosol	26.35	25.78
VIT_04s0044g01460.t01	Wine grape	cytosol	23.89	24.31
VIT_04s0044g00870.t01	Wine grape	cytosol	23.89	23.54
VIT_18s0166g00190.t01	Wine grape	plasma membrane	22.91	23.25
VIT_00s0471g00010.t01	Wine grape	cytosol	23.65	21.48
VIT_18s0001g08790.t01	Wine grape	cytosol	23.89	21.46

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100262692	wikigene:100262692	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like
InterPro:ARM-type_fold	ProteinID:CCB47912	ProteinID:CCB47912.1	UniProt:F6H6S6	EMBL:FN595245	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	EntrezGene:LOC100262692	wikigene:LOC100262692	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849
PANTHER:PTHR22849:SF24	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0001983CBE	InterPro:Ubox_domain
ArrayExpress:VIT_08s0105g00200	EnsemblPlantsGene:VIT_08s0105g00200	EnsemblPlants:VIT_08s0105g00200.t01	unigene:Vvi.25948	RefSeq:XP_002265057	RefSeq:XP_002265057.1
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6H6S6]

Coordinates

chr8:-:7180690..7182105

Molecular Weight (calculated)

45768.3 Da

IEP (calculated)

8.025

GRAVY (calculated)

0.069

Length

406 amino acids

Sequence
(BLAST)

001: MDDVEIPEYF ICPISLQIMR DPVTAITGIT YDRESIENWL FKGNNTCPVT KQPLPPDSDL TPNHTLRRLI QSWCTENASN GVVRIPTPKA PLTKSHVVKL
101: VKELWVPQLQ LKTLRKLELL AMENERNRRY MVEAGVIKSM SSFLVACFNK QQTVGLEEAL SILYLIRVNP TSETRLLPIE NDRIMETFTW ILQCKMDGHS
201: SIKAHALLVL KVMVKTASST QLERLKPEFL SSVVGVLREG ISHQGINAAL HILLDTCPWG RNRMSMIESG AIHDVIEIEL GMPERRTTEL ILGILFHLCS
301: CADGRSQFLS HSGAIAVVSN RMLNVSIAAD DRAILILSLI SKYCGTCVVL EEMISVRAVS KLCVVLQADY AHYLKEKARE ILRSHYDFWK NSPCFISSPL
401: SKIQLI

Best Arabidopsis Sequence Match ( AT3G11840.1 )
(BLAST)

001: MDQEEEEIEI PNYFICPISL EIMKDPVTTV SGITYDRQNI VKWLEKVPSC PVTKQPLPLD SDLTPNHMLR RLIQHWCVEN ETRGVVRIST PRVPPGKLNV
101: VEEIKNLKKF GQEALGREET LQKLEVLAMD GNNRRLMCEC GVHKSLILFV VKCTSEDEDG RRRIKGLDES LRLLHLIGIP SNDAKTILME NDRVMESLTW
201: VLHQEDFLSK AYTIVLLRNL TEYTSSHIVE RLNPEIFKGI IGFLKDVVNS VNRTSPTVRE TVQSSSRPSL GKTEPSKLDH SLVIKQAVTA ALMILLETSS
301: WSRNRSLLVD LGAVSELIEL EISYTGEKRI TELMLGVLSR LCCCANGRAE ILAHRGGIAV VTKRLLRVSP AADDRAISIL TTVSKFSPEN MVVEEMVNVG
401: TVEKLCSVLG MDCGLNLKEK AKEILKDHFD EWKKFPCIDI TLLTKLLSIS PKGPKI

Arabidopsis Description

PUB24E3 ubiquitin-protein ligase PUB24 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF15]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.