CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08490	Canola	cytosol	93.41	92.99
CDY53920	Canola	cytosol	79.32	80.05
CDY47911	Canola	cytosol	75.68	78.91
CDY67531	Canola	cytosol	78.64	77.4
AT3G11840.1	Thale cress	cytosol	79.77	76.97
CDX73849	Canola	cytosol	79.55	74.95
VIT_08s0105g00200.t01	Wine grape	cytosol	47.5	51.48
KRH72180	Soybean	cytosol	24.77	46.98
KRH68013	Soybean	cytosol	30.68	45.61
GSMUA_Achr11P...	Banana	cytosol	36.82	44.26
Solyc01g007050.1.1	Tomato	cytosol	40.0	41.81
PGSC0003DMT400054946	Potato	cytosol	40.0	41.81
CDX84168	Canola	cytosol	36.59	39.66
CDX84587	Canola	cytosol	36.59	39.36
CDY40422	Canola	cytosol	36.82	39.32
CDX79645	Canola	cytosol	36.36	39.22
CDX75084	Canola	cytosol	36.14	39.16
CDY32070	Canola	cytosol	36.59	39.08
CDX78096	Canola	cytosol	33.18	37.53
CDX95337	Canola	cytosol	34.77	37.41
CDY59599	Canola	cytosol	34.09	36.67
CDY23218	Canola	cytosol	32.95	36.62
CDY50158	Canola	cytosol	25.68	27.1
CDX92328	Canola	cytosol	25.68	26.71
CDX95458	Canola	cytosol	25.23	26.62
CDX99233	Canola	cytosol, peroxisome, plastid	25.45	26.6
CDY59286	Canola	cytosol	24.77	25.77
CDY16513	Canola	cytosol	24.77	25.77
CDY50319	Canola	cytosol	22.95	23.65
CDY16432	Canola	cytosol	22.95	23.6
CDX99694	Canola	mitochondrion	23.41	23.52
CDX92016	Canola	mitochondrion	19.32	23.1
CDY27655	Canola	mitochondrion	22.95	23.06
CDX74232	Canola	cytosol, extracellular, mitochondrion, plastid	19.09	22.83
CDY53333	Canola	cytosol	23.18	22.82
CDX83098	Canola	cytosol	22.95	22.8
CDX75980	Canola	cytosol	21.82	22.64
CDX92262	Canola	cytosol	20.91	22.28
CDY28714	Canola	mitochondrion	18.86	22.13
CDY08864	Canola	cytosol	20.91	21.96
CDX82332	Canola	cytosol	21.14	21.93
CDX84538	Canola	cytosol	20.68	21.72
CDY51529	Canola	mitochondrion	18.41	21.6
CDX99325	Canola	cytosol	20.45	21.28
CDY69247	Canola	cytosol	21.14	20.99
CDY18670	Canola	cytosol	20.91	20.77
CDY71041	Canola	cytosol	18.86	20.1

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078ENI9	InterPro:ARM-like	InterPro:ARM-type_fold
EnsemblPlants:CDY01063	ProteinID:CDY01063	ProteinID:CDY01063.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00111103001	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF24	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EE0CDC	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

BnaC05g41370D

Coordinates

chrLK031923:-:966015..967793

Molecular Weight (calculated)

49553.3 Da

IEP (calculated)

6.148

GRAVY (calculated)

-0.117

Length

440 amino acids

Sequence
(BLAST)

001: MDHEEDEIEI PNYFICPISL EIMKDPVTTV SGITYDRQSI VQWLEKVPSC PVTKQPLPLD SDLTPNHMLR RLIQHWCVEN ATRGVVRIPT PRAPPGKPNL
101: IEEIKNLKKF GQEALGKEDT LKKLEVLAME GERNRRLMCE EGVHKSLILF VVKYTREEEE EEGQRRIKGN LDESLRLLHL IGVPLNEART ILIENERILE
201: SLTLVLNQQD FMNKAYTIVL LRNLTENTSS HIVERLSAEI FKGIIGFLKD EVSSSNRVNP SVSVTAALMI LLETSSWSRN RTILVDLGAV SELIELEISS
301: IGEKRTTELV LGILSRLCCC ANGRAEFLAH RGGIAIVTKR LLRVSAAADD RAISILSSVS KYSPESEVVE EMASVRTVKK LCSVLSIDCS LSLKEKAKEI
401: LRDHIDEWKK FPCIDVALVT KLLSSSPKDL LTEYYSRVGV

Best Arabidopsis Sequence Match ( AT3G11840.1 )
(BLAST)

001: MDQEEEEIEI PNYFICPISL EIMKDPVTTV SGITYDRQNI VKWLEKVPSC PVTKQPLPLD SDLTPNHMLR RLIQHWCVEN ETRGVVRIST PRVPPGKLNV
101: VEEIKNLKKF GQEALGREET LQKLEVLAMD GNNRRLMCEC GVHKSLILFV VKCTSEDEDG RRRIKGLDES LRLLHLIGIP SNDAKTILME NDRVMESLTW
201: VLHQEDFLSK AYTIVLLRNL TEYTSSHIVE RLNPEIFKGI IGFLKDVVNS VNRTSPTVRE TVQSSSRPSL GKTEPSKLDH SLVIKQAVTA ALMILLETSS
301: WSRNRSLLVD LGAVSELIEL EISYTGEKRI TELMLGVLSR LCCCANGRAE ILAHRGGIAV VTKRLLRVSP AADDRAISIL TTVSKFSPEN MVVEEMVNVG
401: TVEKLCSVLG MDCGLNLKEK AKEILKDHFD EWKKFPCIDI TLLTKLLSIS PKGPKI

Arabidopsis Description

PUB24E3 ubiquitin-protein ligase PUB24 [Source:UniProtKB/Swiss-Prot;Acc:Q9SF15]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.