Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY23218 | Canola | cytosol | 92.67 | 95.71 |
| CDX78096 | Canola | cytosol | 87.78 | 92.29 |
| CDY59599 | Canola | cytosol | 92.18 | 92.18 |
| AT3G52450.1 | Thale cress | cytosol | 91.44 | 85.98 |
| CDX79645 | Canola | cytosol | 81.66 | 81.86 |
| CDX84587 | Canola | cytosol | 80.2 | 80.2 |
| CDX75084 | Canola | cytosol | 79.22 | 79.8 |
| CDY40422 | Canola | cytosol | 79.46 | 78.88 |
| CDX84168 | Canola | cytosol | 78.24 | 78.82 |
| CDY32070 | Canola | cytosol | 78.73 | 78.16 |
| VIT_08s0105g00190.t01 | Wine grape | cytosol, plastid, vacuole | 59.17 | 58.88 |
| KRH68014 | Soybean | cytosol | 60.39 | 58.81 |
| VIT_08s0105g00180.t01 | Wine grape | cytosol, plastid, vacuole | 58.92 | 58.64 |
| KRG96257 | Soybean | cytosol | 59.66 | 58.23 |
| KRG96268 | Soybean | cytosol | 59.41 | 58.0 |
| PGSC0003DMT400055045 | Potato | cytosol | 29.83 | 57.82 |
| Solyc01g007030.2.1 | Tomato | cytosol | 29.83 | 57.82 |
| KRH35744 | Soybean | cytosol | 59.17 | 57.76 |
| PGSC0003DMT400054949 | Potato | cytosol | 57.21 | 57.64 |
| Solyc01g007040.2.1 | Tomato | cytosol, nucleus, vacuole | 25.18 | 57.54 |
| PGSC0003DMT400055049 | Potato | cytosol, nucleus, plasma membrane | 56.48 | 56.9 |
| Solyc01g007000.2.1 | Tomato | cytosol, nucleus, vacuole | 56.72 | 56.72 |
| PGSC0003DMT400055050 | Potato | cytosol | 54.28 | 56.63 |
| HORVU2Hr1G123130.1 | Barley | cytosol | 6.36 | 56.52 |
| Solyc01g007020.2.1 | Tomato | cytosol | 55.99 | 56.13 |
| PGSC0003DMT400055051 | Potato | cytosol | 54.03 | 56.09 |
| KRH72176 | Soybean | cytosol | 57.21 | 55.98 |
| Solyc01g007010.2.1 | Tomato | cytosol | 55.75 | 55.88 |
| GSMUA_Achr7P03220_001 | Banana | cytosol | 42.3 | 55.81 |
| KRH32856 | Soybean | cytosol | 56.97 | 55.48 |
| PGSC0003DMT400054948 | Potato | cytosol | 37.16 | 53.33 |
| PGSC0003DMT400054947 | Potato | cytosol | 39.12 | 52.98 |
| GSMUA_Achr5P01000_001 | Banana | cytosol | 43.77 | 50.42 |
| GSMUA_Achr10P... | Banana | cytosol | 44.74 | 50.14 |
| GSMUA_Achr11P... | Banana | cytosol | 45.72 | 50.13 |
| GSMUA_Achr8P30400_001 | Banana | cytosol | 42.54 | 47.41 |
| Os04t0686000-01 | Rice | cytosol | 45.48 | 45.04 |
| Os01t0865700-00 | Rice | plastid | 44.25 | 44.47 |
| EES06927 | Sorghum | cytosol | 45.23 | 43.63 |
| EES03937 | Sorghum | plastid | 43.52 | 43.63 |
| Zm00001d042738_P001 | Maize | cytosol | 43.52 | 43.63 |
| TraesCS6D01G367100.1 | Wheat | cytosol | 44.74 | 43.57 |
| OQU85086 | Sorghum | cytosol | 45.48 | 43.56 |
| Os02t0539200-01 | Rice | cytosol | 46.94 | 43.44 |
| TraesCS3B01G409400.1 | Wheat | cytosol | 44.01 | 43.17 |
| HORVU3Hr1G083500.1 | Barley | cytosol | 43.52 | 43.1 |
| TraesCS3A01G376900.1 | Wheat | cytosol | 44.01 | 43.06 |
| TraesCS3D01G370000.1 | Wheat | cytosol | 44.01 | 43.06 |
| TraesCS6D01G367600.1 | Wheat | cytosol | 44.5 | 43.03 |
| TraesCS6A01G382300.1 | Wheat | cytosol | 44.01 | 42.65 |
| TraesCS6B01G421400.1 | Wheat | cytosol | 43.77 | 42.62 |
| TraesCS6B01G421900.1 | Wheat | cytosol | 43.77 | 42.62 |
| HORVU0Hr1G003810.1 | Barley | cytosol | 44.74 | 42.46 |
| TraesCS2B01G314500.1 | Wheat | cytosol | 44.74 | 42.46 |
| TraesCS6B01G420600.1 | Wheat | cytosol | 43.52 | 42.38 |
| TraesCS2A01G298000.1 | Wheat | cytosol | 44.5 | 42.23 |
| TraesCS2D01G296100.1 | Wheat | cytosol | 44.25 | 42.0 |
| Zm00001d016730_P001 | Maize | cytosol | 44.25 | 41.51 |
| TraesCS6A01G382800.1 | Wheat | cytosol | 42.79 | 41.47 |
| EES13136 | Sorghum | cytosol | 42.54 | 40.85 |
| HORVU6Hr1G089560.1 | Barley | plastid | 44.74 | 40.58 |
| HORVU6Hr1G089590.1 | Barley | plastid | 44.74 | 40.49 |
| Zm00001d003745_P001 | Maize | nucleus | 43.77 | 39.96 |
| Zm00001d001769_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome | 37.16 | 38.78 |
| KXG26241 | Sorghum | cytosol | 43.52 | 38.53 |
| CDY47911 | Canola | cytosol | 38.14 | 36.97 |
| CDY67531 | Canola | cytosol | 38.14 | 34.9 |
| CDY08490 | Canola | cytosol | 37.65 | 34.84 |
| CDY01063 | Canola | cytosol | 37.41 | 34.77 |
| CDY53920 | Canola | cytosol | 36.92 | 34.63 |
| TraesCSU01G036400.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 35.7 | 34.19 |
| TraesCS2B01G601300.1 | Wheat | cytosol | 35.45 | 33.96 |
| TraesCS2D01G594700.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 35.45 | 33.96 |
| CDX73849 | Canola | cytosol | 37.16 | 32.55 |
| TraesCS6B01G209000.1 | Wheat | cytosol | 33.25 | 32.15 |
| TraesCS6A01G176800.1 | Wheat | cytosol | 33.74 | 31.94 |
| TraesCS6D01G167300.1 | Wheat | cytosol | 33.5 | 31.64 |
| CDX99233 | Canola | cytosol, peroxisome, plastid | 32.03 | 31.12 |
| HORVU6Hr1G034250.1 | Barley | cytosol, nucleus, peroxisome | 32.76 | 30.95 |
| CDX95458 | Canola | cytosol | 31.54 | 30.94 |
| CDX92328 | Canola | cytosol | 31.78 | 30.73 |
| CDY50158 | Canola | cytosol | 31.3 | 30.7 |
| HORVU2Hr1G123050.1 | Barley | cytosol | 25.18 | 30.65 |
| KXG23010 | Sorghum | cytosol | 33.99 | 30.62 |
| Os12t0161100-00 | Rice | cytosol | 32.27 | 30.07 |
| CDY16513 | Canola | cytosol | 30.56 | 29.55 |
| CDY59286 | Canola | cytosol | 30.32 | 29.31 |
| CDY27655 | Canola | mitochondrion | 30.81 | 28.77 |
| CDX99694 | Canola | mitochondrion | 30.07 | 28.08 |
| GSMUA_Achr9P29630_001 | Banana | cytosol | 42.05 | 27.83 |
| CDY16432 | Canola | cytosol | 28.36 | 27.1 |
| CDY50319 | Canola | cytosol | 28.12 | 26.93 |
| CDX92016 | Canola | mitochondrion | 23.23 | 25.82 |
| CDY08864 | Canola | cytosol | 26.41 | 25.78 |
| CDX92262 | Canola | cytosol | 25.92 | 25.67 |
| CDX74232 | Canola | cytosol, extracellular, mitochondrion, plastid | 22.98 | 25.54 |
| CDX84538 | Canola | cytosol | 26.16 | 25.54 |
| CDY51529 | Canola | mitochondrion | 23.23 | 25.33 |
| CDY71041 | Canola | cytosol | 24.94 | 24.7 |
| CDX99325 | Canola | cytosol | 25.43 | 24.59 |
| CDY28714 | Canola | mitochondrion | 22.49 | 24.53 |
| CDX75980 | Canola | cytosol | 25.43 | 24.53 |
| CDX82332 | Canola | cytosol | 25.18 | 24.29 |
| CDY18670 | Canola | cytosol | 24.45 | 22.57 |
| CDY69247 | Canola | cytosol | 24.21 | 22.35 |
| Zm00001d023480_P001 | Maize | cytosol | 30.32 | 22.18 |
| CDY53333 | Canola | cytosol | 24.21 | 22.15 |
| CDX83098 | Canola | cytosol | 23.72 | 21.9 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078E2F8 | InterPro:ARM-like | InterPro:ARM-type_fold |
| EnsemblPlants:CDX95337 | ProteinID:CDX95337 | ProteinID:CDX95337.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 |
| GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 |
| GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00101010001 | InterPro:IPR003613 | InterPro:IPR011989 | InterPro:IPR013083 |
| PFAM:PF04078 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF65 | SMART:SM00504 |
| SUPFAM:SSF48371 | SUPFAM:SSF57850 | UniPathway:UPA00143 | UniParc:UPI0004EE4FC8 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
BnaC04g28210D
Coordinates
chrLK031888:-:343878..345152
Molecular Weight (calculated)
45954.4 Da
IEP (calculated)
8.942
GRAVY (calculated)
-0.089
Length
409 amino acids
Sequence
(BLAST)
(BLAST)
001: MDQEIEIPSF FLCPISLDIM KDPVIVSTGI TYDRNSIEKW LFTGKENSCP VTKQVITETD LTPNHTLRRL IQSWCSLNAS HGIETIPTPK PPISKSEIER
101: LIKDSSSSHK NQVKCLKRLR QIASENNTNK RCLEAAEVPE FLANIISNLN RFDSSRSLMD EALSLLYHLN ASETARKSLL NNKKGTNLVK TLTKIMQRGI
201: YESRAYATLL LKKILEVADP MQIILLEREL FTEVVQILHD QISHKATKSA MQILMITCPW GRNRHKAVEA GAASMIIELL LDESFSSERR NVEMAMVVLD
301: VLCQCAEGRA EFLNHGAAIA VVSKKILRVS QITSERAVRV LLSVGRFCAT PCLLQEMLQL GVVAKLCLVL QASCGNKTKE KAKELLKLHA RVWRESPCVP
401: RNLYASYPA
101: LIKDSSSSHK NQVKCLKRLR QIASENNTNK RCLEAAEVPE FLANIISNLN RFDSSRSLMD EALSLLYHLN ASETARKSLL NNKKGTNLVK TLTKIMQRGI
201: YESRAYATLL LKKILEVADP MQIILLEREL FTEVVQILHD QISHKATKSA MQILMITCPW GRNRHKAVEA GAASMIIELL LDESFSSERR NVEMAMVVLD
301: VLCQCAEGRA EFLNHGAAIA VVSKKILRVS QITSERAVRV LLSVGRFCAT PCLLQEMLQL GVVAKLCLVL QASCGNKTKE KAKELLKLHA RVWRESPCVP
401: RNLYASYPA
001: MDQEIEIPSF FLCPISLDIM KDPVIVSTGI TYDRESIEKW LFSGKKNSCP VTKQVITETD LTPNHTLRRL IQSWCTLNAS YGIERIPTPK PPICKSEIEK
101: LIKESSSSHL NQVKCLKRLR QIVSENTTNK RCLEAAEVPE FLANIVSNSV DTYNSPSSSL SSSNLNDMCQ SNMLENRFDS SRSLMDEALS VLYHLDTSET
201: ALKSLLNNKK GTNLVKTLTK IMQRGIYESR AYAALLLKKL LEVADPMQII LLERELFGEV IQILHDQISH KATRSAMQIL VITCPWGRNR HKAVEGGTIS
301: MIIELLMDDT FSSERRNSEM AMVVLDMLCQ CAEGRAEFLN HGAAIAVVSK KILRVSQITS ERAVRVLLSV GRFCATPSLL QEMLQLGVVA KLCLVLQVSC
401: GNKTKEKAKE LLKLHARVWR ESPCVPRNLY DSYPA
101: LIKESSSSHL NQVKCLKRLR QIVSENTTNK RCLEAAEVPE FLANIVSNSV DTYNSPSSSL SSSNLNDMCQ SNMLENRFDS SRSLMDEALS VLYHLDTSET
201: ALKSLLNNKK GTNLVKTLTK IMQRGIYESR AYAALLLKKL LEVADPMQII LLERELFGEV IQILHDQISH KATRSAMQIL VITCPWGRNR HKAVEGGTIS
301: MIIELLMDDT FSSERRNSEM AMVVLDMLCQ CAEGRAEFLN HGAAIAVVSK KILRVSQITS ERAVRVLLSV GRFCATPSLL QEMLQLGVVA KLCLVLQVSC
401: GNKTKEKAKE LLKLHARVWR ESPCVPRNLY DSYPA
Arabidopsis Description
PUB22RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VML4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.