Factsheet for Os02t0539200-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plasma membrane 1
cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0827500-01	golgi
Os01t0827600-01	golgi
Os02t0758000-01
Os05t0473500-01	golgi
Os06t0219500-00

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35930.1	Os02t0758000-01	AT4G25200.1	21798944
AT2G35930.1	Os06t0219500-00	AT4G25200.1	21798944
AT3G52450.1	Os01t0827500-01	AT1G07000.1	23170036
AT3G52450.1	Os01t0827600-01	AT1G07000.1	23170036
AT3G52450.1	Os05t0473500-01	AT1G07000.1	23170036
AT3G52450.1	Os01t0827500-01	AT1G07000.1	23170036
AT3G52450.1	Os01t0827600-01	AT1G07000.1	23170036
AT3G52450.1	Os05t0473500-01	AT1G07000.1	23170036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G367100.1	Wheat	cytosol	72.17	75.95
EES06927	Sorghum	cytosol	72.85	75.94
OQU85086	Sorghum	cytosol	73.3	75.88
TraesCS6A01G382300.1	Wheat	cytosol	71.95	75.36
TraesCS6B01G421900.1	Wheat	cytosol	71.27	75.0
TraesCS6B01G420600.1	Wheat	cytosol	71.27	75.0
TraesCS6B01G421400.1	Wheat	cytosol	70.81	74.52
TraesCS6D01G367600.1	Wheat	cytosol	71.27	74.47
TraesCS6A01G382800.1	Wheat	cytosol	70.14	73.46
Zm00001d016730_P001	Maize	cytosol	71.04	72.02
HORVU6Hr1G089590.1	Barley	plastid	71.72	70.13
HORVU6Hr1G089560.1	Barley	plastid	71.49	70.07
GSMUA_Achr7P03220_001	Banana	cytosol	37.56	53.55
Os04t0686000-01	Rice	cytosol	49.09	52.54
GSMUA_Achr5P01000_001	Banana	cytosol	42.08	52.39
VIT_08s0105g00180.t01	Wine grape	cytosol, plastid, vacuole	45.93	49.39
Os01t0865700-00	Rice	plastid	45.48	49.39
VIT_08s0105g00190.t01	Wine grape	cytosol, plastid, vacuole	45.7	49.15
VIT_06s0009g00320.t01	Wine grape	cytosol	45.93	49.03
PGSC0003DMT400055045	Potato	cytosol	23.08	48.34
Solyc01g007030.2.1	Tomato	cytosol	23.08	48.34
Solyc01g007000.2.1	Tomato	cytosol, nucleus, vacuole	44.34	47.92
CDY32070	Canola	cytosol	44.34	47.57
CDX75084	Canola	cytosol	43.44	47.29
CDY40422	Canola	cytosol	43.89	47.09
Bra017278.1-P	Field mustard	cytosol	43.89	47.09
CDX84168	Canola	cytosol	43.21	47.04
Bra023044.1-P	Field mustard	cytosol	43.44	46.94
CDX84587	Canola	cytosol	43.44	46.94
CDX95337	Canola	cytosol	43.44	46.94
CDX79645	Canola	cytosol	43.21	46.81
PGSC0003DMT400055049	Potato	cytosol, nucleus, plasma membrane	42.99	46.8
KRG96257	Soybean	cytosol	44.34	46.78
AT2G35930.1	Thale cress	cytosol	43.44	46.72
Solyc01g007020.2.1	Tomato	cytosol	42.99	46.57
PGSC0003DMT400054949	Potato	cytosol	42.76	46.55
KRH35744	Soybean	cytosol	44.12	46.54
KRG96268	Soybean	cytosol	44.12	46.54
Solyc11g068920.1.1	Tomato	cytosol	42.53	46.53
Bra005309.1-P	Field mustard	cytosol	40.72	46.51
KRH68014	Soybean	cytosol	44.12	46.43
CDX78096	Canola	cytosol	40.72	46.27
CDY23218	Canola	cytosol	41.4	46.21
CDY59599	Canola	cytosol	42.76	46.21
KRH22633	Soybean	cytosol, nucleus	42.08	46.15
PGSC0003DMT400050493	Potato	cytosol	41.86	45.79
PGSC0003DMT400055051	Potato	cytosol	40.72	45.69
PGSC0003DMT400055050	Potato	cytosol	40.5	45.66
Solyc01g007010.2.1	Tomato	cytosol	42.08	45.59
KRH32856	Soybean	cytosol	43.21	45.48
KRH26691	Soybean	cytosol	39.59	45.22
KRH72176	Soybean	cytosol	42.76	45.22
KRH25324	Soybean	cytosol	37.1	45.18
PGSC0003DMT400054947	Potato	cytosol	30.54	44.7
Solyc01g009330.1.1	Tomato	cytosol	42.99	44.6
PGSC0003DMT400054948	Potato	cytosol	28.73	44.56
Solyc01g007040.2.1	Tomato	cytosol, nucleus, vacuole	17.87	44.13
Bra033430.1-P	Field mustard	cytosol	42.31	44.1
Bra006925.1-P	Field mustard	cytosol	43.21	43.91
AT3G52450.1	Thale cress	cytosol	42.99	43.68
Bra012803.1-P	Field mustard	cytosol	41.4	43.26
PGSC0003DMT400038197	Potato	cytosol	41.86	40.75
Os06t0248500-00	Rice	mitochondrion	31.67	30.91
Os12t0161100-00	Rice	cytosol	30.09	30.3
Os04t0589700-01	Rice	cytosol	28.73	30.17
Os02t0738200-01	Rice	mitochondrion	31.0	30.04
Os02t0548700-00	Rice	cytosol, extracellular, plastid	27.83	29.5
GSMUA_Achr9P29630_001	Banana	cytosol	41.18	29.45
Os02t0690600-01	Rice	cytosol	27.38	28.47
Os04t0437300-01	Rice	cytosol	26.7	27.7
Os03t0240600-01	Rice	plastid	27.83	27.64
Os03t0232600-01	Rice	cytosol	26.24	25.27
Os04t0418500-01	Rice	plastid	25.34	24.83
Os05t0439400-01	Rice	plasma membrane	23.53	23.01
Os02t0540700-00	Rice	plastid	26.24	22.97

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:4329585	InterPro:ARM-like	InterPro:ARM-type_fold
ProteinID:BAD28838.1	ProteinID:BAF08971.1	ProteinID:BAS79089.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	EnsemblPlantsGene:Os02g0539200
EnsemblPlants:Os02t0539200-01	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF62	UniProt:Q6ER82
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI00003CE802	InterPro:Ubox_domain	RefSeq:XP_015624272.1
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

plant U-box-containing protein 33, U-box protein 33Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os02t0539200-01)

Coordinates

chr2:-:19981534..19983176

Molecular Weight (calculated)

46960.6 Da

IEP (calculated)

8.104

GRAVY (calculated)

0.003

Length

442 amino acids

Sequence
(BLAST)

001: MEEAAAEVPS YFLCPISLEI MRDPVTLATG ITYDRSSIER WMFGGGGGDG GKGTCPVTRR QLAPAEREAT PNHTLRRLIQ AWCAAHAVER FPTPRPPVDS
101: CRVAALVDEG TTTMLGGGGR QRQLAALREI KAIAAESDRN KRCVEATPGA VEFLVSVVVQ SHAAASTSAS SDDDDLFDSV IDSPMSTSSP EEEALGVLYS
201: LKPSEPTLRR VLGKDNGVGF LDTLASVLRR PSYRSRAYAI LLLKAVTSAM PPERLMAVSP ELVEEVVRVV SDGVSSKAVK AALHVLCRLC PWGRNRVKAV
301: EAGAVAALVE LLLDEEGGGG RRRAAELAVV AIDHLCGCAE GRSELVAHPA GLAVVSKRAM RVSPAATESA VRALHAVARN AATPAVLQEM LAVGVVAKLL
401: LVLQADGGER ARARAREMLR ANARVWKDSP CLQAHLKASY PS

Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)

001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C

Arabidopsis Description

PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.