Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G420600.1 | Wheat | cytosol | 99.05 | 99.05 |
| TraesCS6B01G421900.1 | Wheat | cytosol | 93.81 | 93.81 |
| TraesCS6A01G382800.1 | Wheat | cytosol | 93.81 | 93.36 |
| TraesCS6D01G367600.1 | Wheat | cytosol | 93.33 | 92.67 |
| HORVU6Hr1G089590.1 | Barley | plastid | 92.62 | 86.06 |
| HORVU6Hr1G089560.1 | Barley | plastid | 92.38 | 86.03 |
| OQU85086 | Sorghum | cytosol | 74.76 | 73.54 |
| EES06927 | Sorghum | cytosol | 73.81 | 73.11 |
| Os02t0539200-01 | Rice | cytosol | 74.52 | 70.81 |
| Zm00001d016730_P001 | Maize | cytosol | 71.19 | 68.58 |
| TraesCS2B01G314500.1 | Wheat | cytosol | 62.14 | 60.56 |
| GSMUA_Achr5P01000_001 | Banana | cytosol | 44.05 | 52.11 |
| GSMUA_Achr7P03220_001 | Banana | cytosol | 38.1 | 51.61 |
| PGSC0003DMT400055045 | Potato | cytosol | 24.52 | 48.82 |
| Solyc01g007030.2.1 | Tomato | cytosol | 24.52 | 48.82 |
| VIT_08s0105g00180.t01 | Wine grape | cytosol, plastid, vacuole | 46.19 | 47.2 |
| VIT_08s0105g00190.t01 | Wine grape | cytosol, plastid, vacuole | 45.95 | 46.96 |
| CDY32070 | Canola | cytosol | 45.95 | 46.84 |
| CDY40422 | Canola | cytosol | 45.48 | 46.36 |
| Bra017278.1-P | Field mustard | cytosol | 45.48 | 46.36 |
| CDX79645 | Canola | cytosol | 44.76 | 46.08 |
| AT2G35930.1 | Thale cress | cytosol | 45.0 | 45.99 |
| KRH68014 | Soybean | cytosol | 45.95 | 45.95 |
| CDX84587 | Canola | cytosol | 44.52 | 45.72 |
| Bra023044.1-P | Field mustard | cytosol | 44.52 | 45.72 |
| CDX75084 | Canola | cytosol | 44.05 | 45.57 |
| CDX84168 | Canola | cytosol | 44.05 | 45.57 |
| Solyc01g007000.2.1 | Tomato | cytosol, nucleus, vacuole | 44.29 | 45.48 |
| KRH72176 | Soybean | cytosol | 45.24 | 45.45 |
| VIT_06s0009g00320.t01 | Wine grape | cytosol | 44.76 | 45.41 |
| PGSC0003DMT400055049 | Potato | cytosol, nucleus, plasma membrane | 43.81 | 45.32 |
| KRH35744 | Soybean | cytosol | 45.0 | 45.11 |
| KRG96257 | Soybean | cytosol | 45.0 | 45.11 |
| KRG96268 | Soybean | cytosol | 44.76 | 44.87 |
| PGSC0003DMT400054949 | Potato | cytosol | 43.33 | 44.83 |
| Solyc11g068920.1.1 | Tomato | cytosol | 43.1 | 44.8 |
| KRH32856 | Soybean | cytosol | 44.76 | 44.76 |
| Bra005309.1-P | Field mustard | cytosol | 41.19 | 44.7 |
| KRH22633 | Soybean | cytosol, nucleus | 42.86 | 44.66 |
| Solyc01g007020.2.1 | Tomato | cytosol | 43.33 | 44.61 |
| KRH26691 | Soybean | cytosol | 40.71 | 44.19 |
| PGSC0003DMT400050493 | Potato | cytosol | 42.38 | 44.06 |
| CDY59599 | Canola | cytosol | 42.86 | 44.01 |
| CDX78096 | Canola | cytosol | 40.71 | 43.96 |
| CDY23218 | Canola | cytosol | 41.43 | 43.94 |
| CDX95337 | Canola | cytosol | 42.62 | 43.77 |
| PGSC0003DMT400055051 | Potato | cytosol | 40.95 | 43.65 |
| Solyc01g007010.2.1 | Tomato | cytosol | 42.38 | 43.63 |
| PGSC0003DMT400055050 | Potato | cytosol | 40.71 | 43.62 |
| TraesCS3B01G409400.1 | Wheat | cytosol | 43.1 | 43.41 |
| PGSC0003DMT400054947 | Potato | cytosol | 30.71 | 42.72 |
| Bra033430.1-P | Field mustard | cytosol | 42.62 | 42.22 |
| KRH25324 | Soybean | cytosol | 36.43 | 42.15 |
| Solyc01g009330.1.1 | Tomato | cytosol | 42.38 | 41.78 |
| PGSC0003DMT400054948 | Potato | cytosol | 28.33 | 41.75 |
| Bra006925.1-P | Field mustard | cytosol | 43.1 | 41.61 |
| Solyc01g007040.2.1 | Tomato | cytosol, nucleus, vacuole | 17.62 | 41.34 |
| Bra012803.1-P | Field mustard | cytosol | 41.43 | 41.13 |
| AT3G52450.1 | Thale cress | cytosol | 42.38 | 40.92 |
| TraesCS2B01G601300.1 | Wheat | cytosol | 41.19 | 40.52 |
| PGSC0003DMT400038197 | Potato | cytosol | 41.9 | 38.77 |
| TraesCS6B01G209000.1 | Wheat | cytosol | 33.1 | 32.86 |
| TraesCS7B01G105600.1 | Wheat | mitochondrion | 32.14 | 30.27 |
| TraesCS2B01G471900.1 | Wheat | cytosol | 29.29 | 29.43 |
| TraesCS4B01G228700.1 | Wheat | mitochondrion | 30.48 | 29.09 |
| TraesCS2B01G323600.1 | Wheat | cytosol | 27.62 | 29.0 |
| TraesCS6B01G268300.1 | Wheat | extracellular | 27.62 | 28.5 |
| TraesCS6B01G290700.1 | Wheat | cytosol | 29.05 | 28.31 |
| TraesCS6B01G342800.1 | Wheat | mitochondrion | 30.48 | 28.19 |
| GSMUA_Achr9P29630_001 | Banana | cytosol | 41.43 | 28.16 |
| TraesCS7B01G300000.1 | Wheat | cytosol, extracellular, nucleus | 24.76 | 27.08 |
| TraesCS4B01G236200.1 | Wheat | cytosol | 27.14 | 24.84 |
| TraesCS2B01G315100.1 | Wheat | cytosol | 25.95 | 24.72 |
| TraesCS1B01G284200.1 | Wheat | mitochondrion | 22.14 | 20.53 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:ARM-like | InterPro:ARM-type_fold | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR003613 | InterPro:IPR011989 |
| InterPro:IPR013083 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF62 | SMART:SM00504 |
| SUPFAM:SSF48371 | SUPFAM:SSF57850 | EnsemblPlantsGene:TraesCS6B01G421400 | EnsemblPlants:TraesCS6B01G421400.1 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD |
| TIGR:cd16664 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr6B:-:692193540..692194802
Molecular Weight (calculated)
45916.1 Da
IEP (calculated)
8.261
GRAVY (calculated)
0.009
Length
420 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGSSVEVPP YFLCPISLEI MRDPVTLATG ITYDRCSIER WLSDGHATCP VTQQKLAEAD REATPNHTLR RLTQAWCALH AVERFPTPRL PLDAARVAQI
101: VEEGHGAGRQ QELAALREIK AIVAESDRNR RCVEATPGAV EFLLSVVRNH ATASKSAEDL LELSLDSPTS TSSPEEDALS VICSLKPSKK SLVRILEENG
201: DFLDTLVYML RRPSYRSRCY GTLLLKAMVS VMEPARLMAV RTEVVQELVR VVSDRVSAKA VKAALNVLCR LCPWGRNRVK AVEAGAMTVL VELLLDEGGR
301: HPTELAVVAI DHLCGCAEGR SDLVAHPAGL AIVAKKAMRV SLTTTESAVR ALHALARHSP TPAVLQEMLA VGVVAKLLLV LQVDAGERAR AKAKELLKMH
401: ARVWKDSPCM QAHLKARYPC
101: VEEGHGAGRQ QELAALREIK AIVAESDRNR RCVEATPGAV EFLLSVVRNH ATASKSAEDL LELSLDSPTS TSSPEEDALS VICSLKPSKK SLVRILEENG
201: DFLDTLVYML RRPSYRSRCY GTLLLKAMVS VMEPARLMAV RTEVVQELVR VVSDRVSAKA VKAALNVLCR LCPWGRNRVK AVEAGAMTVL VELLLDEGGR
301: HPTELAVVAI DHLCGCAEGR SDLVAHPAGL AIVAKKAMRV SLTTTESAVR ALHALARHSP TPAVLQEMLA VGVVAKLLLV LQVDAGERAR AKAKELLKMH
401: ARVWKDSPCM QAHLKARYPC
001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
Arabidopsis Description
PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.