Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G296100.1 | Wheat | cytosol | 97.22 | 97.22 |
| TraesCS2A01G298000.1 | Wheat | cytosol | 96.75 | 96.75 |
| HORVU0Hr1G003810.1 | Barley | cytosol | 96.29 | 96.29 |
| Zm00001d003745_P001 | Maize | nucleus | 72.62 | 69.87 |
| KXG26241 | Sorghum | cytosol | 74.48 | 69.48 |
| TraesCS6B01G420600.1 | Wheat | cytosol | 61.02 | 62.62 |
| TraesCS6B01G421900.1 | Wheat | cytosol | 61.02 | 62.62 |
| TraesCS6B01G421400.1 | Wheat | cytosol | 60.56 | 62.14 |
| GSMUA_Achr7P03220_001 | Banana | cytosol | 36.89 | 51.29 |
| VIT_08s0105g00180.t01 | Wine grape | cytosol, plastid, vacuole | 44.08 | 46.23 |
| VIT_08s0105g00190.t01 | Wine grape | cytosol, plastid, vacuole | 43.85 | 45.99 |
| PGSC0003DMT400055045 | Potato | cytosol | 22.51 | 45.97 |
| Solyc01g007030.2.1 | Tomato | cytosol | 22.51 | 45.97 |
| Solyc01g007000.2.1 | Tomato | cytosol, nucleus, vacuole | 43.62 | 45.97 |
| GSMUA_Achr5P01000_001 | Banana | cytosol | 37.59 | 45.63 |
| VIT_06s0009g00320.t01 | Wine grape | cytosol | 43.62 | 45.41 |
| Solyc01g007020.2.1 | Tomato | cytosol | 42.92 | 45.34 |
| PGSC0003DMT400054949 | Potato | cytosol | 42.46 | 45.07 |
| CDX78096 | Canola | cytosol | 40.6 | 44.99 |
| CDX95337 | Canola | cytosol | 42.46 | 44.74 |
| CDY59599 | Canola | cytosol | 42.23 | 44.5 |
| PGSC0003DMT400055050 | Potato | cytosol | 40.37 | 44.39 |
| PGSC0003DMT400055049 | Potato | cytosol, nucleus, plasma membrane | 41.76 | 44.34 |
| CDX75084 | Canola | cytosol | 41.76 | 44.34 |
| CDX84168 | Canola | cytosol | 41.53 | 44.09 |
| Bra023044.1-P | Field mustard | cytosol | 41.76 | 44.01 |
| PGSC0003DMT400055051 | Potato | cytosol | 40.14 | 43.91 |
| Solyc01g007010.2.1 | Tomato | cytosol | 41.53 | 43.87 |
| CDX84587 | Canola | cytosol | 41.53 | 43.77 |
| CDY23218 | Canola | cytosol | 40.14 | 43.69 |
| Bra005309.1-P | Field mustard | cytosol | 39.21 | 43.67 |
| CDX79645 | Canola | cytosol | 41.3 | 43.63 |
| KRH68014 | Soybean | cytosol | 42.46 | 43.57 |
| CDY32070 | Canola | cytosol | 41.53 | 43.45 |
| PGSC0003DMT400050493 | Potato | cytosol | 40.6 | 43.32 |
| Bra017278.1-P | Field mustard | cytosol | 41.3 | 43.2 |
| CDY40422 | Canola | cytosol | 41.3 | 43.2 |
| Solyc11g068920.1.1 | Tomato | cytosol | 40.37 | 43.07 |
| TraesCS3B01G409400.1 | Wheat | cytosol | 41.3 | 42.69 |
| AT2G35930.1 | Thale cress | cytosol | 40.6 | 42.58 |
| KRH35744 | Soybean | cytosol | 41.3 | 42.48 |
| KRG96257 | Soybean | cytosol | 41.3 | 42.48 |
| Solyc01g007040.2.1 | Tomato | cytosol, nucleus, vacuole | 17.63 | 42.46 |
| PGSC0003DMT400054948 | Potato | cytosol | 28.07 | 42.46 |
| Bra033430.1-P | Field mustard | cytosol | 41.76 | 42.45 |
| Bra012803.1-P | Field mustard | cytosol | 41.53 | 42.32 |
| KRG96268 | Soybean | cytosol | 41.07 | 42.24 |
| Bra006925.1-P | Field mustard | cytosol | 42.46 | 42.07 |
| KRH22633 | Soybean | cytosol, nucleus | 39.21 | 41.94 |
| PGSC0003DMT400054947 | Potato | cytosol | 29.23 | 41.72 |
| KRH32856 | Soybean | cytosol | 40.37 | 41.43 |
| KRH72176 | Soybean | cytosol | 40.14 | 41.39 |
| AT3G52450.1 | Thale cress | cytosol | 41.53 | 41.15 |
| Solyc01g009330.1.1 | Tomato | cytosol | 40.6 | 41.08 |
| KRH26691 | Soybean | cytosol | 36.43 | 40.57 |
| KRH25324 | Soybean | cytosol | 34.11 | 40.5 |
| TraesCS2B01G601300.1 | Wheat | cytosol | 39.91 | 40.28 |
| PGSC0003DMT400038197 | Potato | cytosol | 41.3 | 39.21 |
| TraesCS6B01G209000.1 | Wheat | cytosol | 30.63 | 31.21 |
| TraesCS7B01G105600.1 | Wheat | mitochondrion | 30.63 | 29.6 |
| TraesCS2B01G471900.1 | Wheat | cytosol | 28.54 | 29.43 |
| TraesCS6B01G268300.1 | Wheat | extracellular | 27.15 | 28.75 |
| GSMUA_Achr9P29630_001 | Banana | cytosol | 40.6 | 28.32 |
| TraesCS6B01G290700.1 | Wheat | cytosol | 28.07 | 28.07 |
| TraesCS6B01G342800.1 | Wheat | mitochondrion | 29.23 | 27.75 |
| TraesCS4B01G228700.1 | Wheat | mitochondrion | 27.38 | 26.82 |
| TraesCS2B01G323600.1 | Wheat | cytosol | 23.9 | 25.75 |
| TraesCS7B01G300000.1 | Wheat | cytosol, extracellular, nucleus | 22.51 | 25.26 |
| TraesCS4B01G236200.1 | Wheat | cytosol | 25.06 | 23.53 |
| TraesCS2B01G315100.1 | Wheat | cytosol | 23.2 | 22.68 |
| TraesCS1B01G284200.1 | Wheat | mitochondrion | 20.19 | 19.21 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:ARM-like | InterPro:ARM-type_fold | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR003613 | InterPro:IPR011989 |
| InterPro:IPR013083 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF49 | SMART:SM00504 |
| SUPFAM:SSF48371 | SUPFAM:SSF57850 | EnsemblPlantsGene:TraesCS2B01G314500 | EnsemblPlants:TraesCS2B01G314500.1 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD |
| TIGR:cd16664 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2B:-:449514709..449516004
Molecular Weight (calculated)
46511.4 Da
IEP (calculated)
7.250
GRAVY (calculated)
0.023
Length
431 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGLPAQVEV PSYFLCPISM EIMRDPVTLS SGITYDRESI ERWVFTDGHG ECPMTKQQLG AADREPTPNH TLRRLIQGWC AVHAVERFPT PRAPIDAARV
101: ETIVDAARRG QDLLVASLKE LADIVAESDC NRRCVESTPG AVAFLVSVVK KHAADETPKP LESQEDHMFG TLVGSPKASS PEDVALSILY SLRLSEGSWK
201: RVLERGDNFL DTMASVLRRP SYLSRTHGIQ LLKAAVSEMP PSQLTSASAE LVEGVVSVVT DKLSGKAVKI ALQVLCRLCL WGRNRVKAVE AGAVGALVEL
301: LLDECCGGSK RASELAIVVM DHLCGCAEGR LELVAHPAGL AVMARAVTRV SAAGTESAVR ALHAVARHSA TPAVLQEMLA VGVVGRLLFL VQTGAAGDRP
401: RERAREMLKM HARVWRGSPC FTPELNASYP S
101: ETIVDAARRG QDLLVASLKE LADIVAESDC NRRCVESTPG AVAFLVSVVK KHAADETPKP LESQEDHMFG TLVGSPKASS PEDVALSILY SLRLSEGSWK
201: RVLERGDNFL DTMASVLRRP SYLSRTHGIQ LLKAAVSEMP PSQLTSASAE LVEGVVSVVT DKLSGKAVKI ALQVLCRLCL WGRNRVKAVE AGAVGALVEL
301: LLDECCGGSK RASELAIVVM DHLCGCAEGR LELVAHPAGL AVMARAVTRV SAAGTESAVR ALHAVARHSA TPAVLQEMLA VGVVGRLLFL VQTGAAGDRP
401: RERAREMLKM HARVWRGSPC FTPELNASYP S
001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
Arabidopsis Description
PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.