Factsheet for TraesCS4B01G228700.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G229900.1	Wheat	mitochondrion	95.68	95.68
HORVU4Hr1G064070.1	Barley	mitochondrion	93.41	93.41
EER92576	Sorghum	mitochondrion	81.59	79.07
Zm00001d028374_P001	Maize	mitochondrion	80.23	78.97
Os03t0240600-01	Rice	plastid	79.77	78.88
GSMUA_Achr6P11310_001	Banana	cytosol	46.82	54.21
GSMUA_Achr11P...	Banana	mitochondrion	51.59	53.41
TraesCS7B01G105600.1	Wheat	mitochondrion	51.82	51.12
GSMUA_Achr10P...	Banana	cytosol	43.18	50.53
GSMUA_Achr7P18640_001	Banana	mitochondrion	43.41	50.4
GSMUA_Achr6P02470_001	Banana	mitochondrion	43.41	50.26
TraesCS6B01G342800.1	Wheat	mitochondrion	51.14	49.56
VIT_01s0011g06140.t01	Wine grape	mitochondrion	48.41	48.19
GSMUA_Achr3P02030_001	Banana	plastid	42.27	44.39
KRH48691	Soybean	cytosol	42.95	43.25
KRH39018	Soybean	mitochondrion	42.05	42.24
PGSC0003DMT400058621	Potato	cytosol, mitochondrion	42.73	41.69
Solyc04g008100.1.1	Tomato	cytosol	41.36	41.18
KRG97963	Soybean	mitochondrion	40.23	41.07
Solyc01g005160.2.1	Tomato	mitochondrion	41.82	40.89
KRH30918	Soybean	mitochondrion	40.23	40.69
PGSC0003DMT400073836	Potato	cytosol	38.64	40.57
KRH17309	Soybean	cytosol, mitochondrion	40.23	40.32
KRH72959	Soybean	cytosol, mitochondrion	40.0	40.18
PGSC0003DMT400075778	Potato	mitochondrion	40.0	39.82
Solyc11g006030.1.1	Tomato	cytosol	38.86	39.77
CDY16432	Canola	cytosol	36.59	37.62
Bra039752.1-P	Field mustard	cytosol	35.91	37.44
CDY50319	Canola	cytosol	35.91	37.0
AT1G66160.1	Thale cress	cytosol	35.45	36.19
AT5G37490.1	Thale cress	cytosol, nucleus, peroxisome	35.23	35.63
Bra025442.1-P	Field mustard	mitochondrion	34.77	34.93
CDY27655	Canola	mitochondrion	34.55	34.7
CDX99694	Canola	mitochondrion	34.32	34.47
AT3G02840.1	Thale cress	mitochondrion	27.27	31.66
CDX74232	Canola	cytosol, extracellular, mitochondrion, plastid	25.91	30.98
CDX92016	Canola	mitochondrion	25.91	30.98
TraesCS6B01G268300.1	Wheat	extracellular	28.41	30.71
TraesCS6B01G421400.1	Wheat	cytosol	29.09	30.48
Bra001067.1-P	Field mustard	mitochondrion	25.45	30.43
Bra040605.1-P	Field mustard	mitochondrion	25.91	30.4
TraesCS6B01G420600.1	Wheat	cytosol	28.86	30.24
CDY51529	Canola	mitochondrion	25.68	30.13
CDY28714	Canola	mitochondrion	25.45	29.87
TraesCS6B01G421900.1	Wheat	cytosol	28.18	29.52
TraesCS3B01G409400.1	Wheat	cytosol	27.5	29.02
TraesCS2B01G314500.1	Wheat	cytosol	26.82	27.38
TraesCS6B01G290700.1	Wheat	cytosol	26.82	27.38
TraesCS2B01G471900.1	Wheat	cytosol	25.68	27.03
TraesCS6B01G209000.1	Wheat	cytosol	25.23	26.24
TraesCS2B01G323600.1	Wheat	cytosol	23.41	25.75
TraesCS7B01G300000.1	Wheat	cytosol, extracellular, nucleus	21.36	24.48
TraesCS2B01G601300.1	Wheat	cytosol	23.18	23.89
TraesCS4B01G236200.1	Wheat	cytosol	24.77	23.75
TraesCS2B01G315100.1	Wheat	cytosol	23.64	23.58
TraesCS1B01G284200.1	Wheat	mitochondrion	23.41	22.74

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF107	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS4B01G228700	EnsemblPlants:TraesCS4B01G228700.1	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4B:+:479398067..479399389

Molecular Weight (calculated)

46541.8 Da

IEP (calculated)

8.497

GRAVY (calculated)

0.150

Length

440 amino acids

Sequence
(BLAST)

001: MALLARRARR AATKAAAPVA VELSIPAHFR CPISLDLMRD PVTAPTGITY DRESIEAWLD TGRAAVCPVT HAPLRRDDLV PNHAIRRVIQ DWCVANRSRG
101: VERIPTPKIP VTLVQASELL FEVAESARAR DGGAAARCAA AVARVRALAR ESERNRRCFA SIGTGRVLAA ALESLAVGGG EPAGGVLEDI LAALVRMAPL
201: DEEAARILGS PHSLGSLVAI AENGSLAGRL NAVMAIKEVV STCGGACTNL DGKADEIVDA LVKIIKAPIC PQATKAAMVA AYHLARSDER VASRVAETGL
301: VPVLVESLVD ADKSVAEKAL ALLDAVLASE EGRESARMHA LTVPILVKKM FRVSDMATEL AVSAMWRLGK NAGGDEGAAT KCLVEALRVG AFQKLLLLLQ
401: VGCRDATKEK TTELLRMLNK HKGAGECVDA MDFRGLNKLS

Best Arabidopsis Sequence Match ( AT1G66160.1 )
(BLAST)

001: MGLSLRVRRR GGSVSKKEII PVTSCSEEVE ITIPSQFQCP ISYELMKDPV IIASGITYDR ENIEKWFESG YQTCPVTNTV LTSLEQIPNH TIRRMIQGWC
101: GSSLGGGIER IPTPRVPVTS HQVSEICERL SAATRRGDYA ACMEMVTKMT RLGKESERNR KCVKENGAGL VLCVCFDAFS ENANASLLLE ETVSVLTWML
201: PIGLEGQSKL TTTSSFNRLV ELLRNGDQNA AFLIKELLEL NVTHVHALTK INGVQEAFMK SINRDSTCVN SLISIHHMIL TNQETVSRFL ELDLVNITVE
301: MLVDSENSVC EKALTVLNVI CETKEGREKV RRNKLVIPIL VKKILKISEK KDLVSVMWKV CKSGDGSEVE EALRLGAFKK LVVMLQVGCG EGTKEKVTEL
401: LKMMNKVMKM NGFVDRSYSS SIEFKHVKKP F

Arabidopsis Description

PUB20U-box domain-containing protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8D1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.