Factsheet for Bra039752.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16432	Canola	cytosol	98.82	97.43
CDY50319	Canola	cytosol	97.39	96.25
AT1G66160.1	Thale cress	cytosol	74.88	73.32
Bra025442.1-P	Field mustard	mitochondrion	60.66	58.45
PGSC0003DMT400073836	Potato	cytosol	45.02	45.35
KRH30918	Soybean	mitochondrion	46.68	45.29
KRG97963	Soybean	mitochondrion	46.21	45.24
Solyc11g006030.1.1	Tomato	cytosol	45.5	44.65
KRH17309	Soybean	cytosol, mitochondrion	45.97	44.19
KRH72959	Soybean	cytosol, mitochondrion	44.55	42.92
GSMUA_Achr10P...	Banana	cytosol	36.73	41.22
GSMUA_Achr11P...	Banana	mitochondrion	39.34	39.06
GSMUA_Achr6P11310_001	Banana	cytosol	34.83	38.68
GSMUA_Achr7P18640_001	Banana	mitochondrion	32.94	36.68
Os03t0240600-01	Rice	plastid	38.39	36.4
Bra001067.1-P	Field mustard	mitochondrion	31.52	36.14
GSMUA_Achr6P02470_001	Banana	mitochondrion	32.46	36.05
TraesCS4B01G228700.1	Wheat	mitochondrion	37.44	35.91
TraesCS4D01G229900.1	Wheat	mitochondrion	37.2	35.68
Zm00001d017976_P001	Maize	mitochondrion	38.15	35.62
HORVU4Hr1G064070.1	Barley	mitochondrion	36.97	35.45
Zm00001d028374_P001	Maize	mitochondrion	36.73	34.68
TraesCS7D01G201600.1	Wheat	mitochondrion	36.26	34.62
Bra040605.1-P	Field mustard	mitochondrion	30.57	34.4
TraesCS7B01G105600.1	Wheat	mitochondrion	36.26	34.3
EER92576	Sorghum	mitochondrion	36.73	34.14
Zm00001d044734_P001	Maize	mitochondrion	35.55	33.94
GSMUA_Achr3P02030_001	Banana	plastid	33.65	33.89
Os06t0248500-00	Rice	mitochondrion	36.02	33.55
KXG19704	Sorghum	mitochondrion	36.49	33.55
EES05563	Sorghum	mitochondrion	36.49	33.33
TraesCS6B01G342800.1	Wheat	mitochondrion	35.31	32.82
TraesCS6A01G312600.1	Wheat	mitochondrion	34.83	32.31
Os02t0738200-01	Rice	mitochondrion	34.83	32.24
TraesCS6D01G292200.1	Wheat	mitochondrion	34.6	32.16
Zm00001d030251_P001	Maize	cytosol	33.18	31.53
HORVU7Hr1G040790.2	Barley	plastid	35.78	30.94
HORVU6Hr1G077120.1	Barley	plastid	35.78	29.49
Bra017278.1-P	Field mustard	cytosol	28.67	29.37
Bra023044.1-P	Field mustard	cytosol	27.96	28.85
TraesCS5A01G088600.1	Wheat	cytosol	22.99	28.36
KXG38738	Sorghum	plastid	32.94	28.14
Bra005309.1-P	Field mustard	cytosol	25.59	27.91
Bra012803.1-P	Field mustard	cytosol	27.96	27.9
Bra006925.1-P	Field mustard	cytosol	27.96	27.13
Bra033430.1-P	Field mustard	cytosol	27.25	27.12
Bra014206.1-P	Field mustard	cytosol	25.83	25.77
Bra038205.1-P	Field mustard	cytosol	25.12	25.42
Bra022417.1-P	Field mustard	cytosol	24.88	24.88
Bra022415.1-P	Field mustard	cytosol	24.88	24.88
Bra038683.1-P	Field mustard	cytosol	24.64	23.27
Bra024318.1-P	Field mustard	cytosol	22.99	23.15
Bra029975.1-P	Field mustard	cytosol	23.7	22.57
Bra001424.1-P	Field mustard	cytosol	24.88	22.44
Bra037833.1-P	Field mustard	cytosol	23.46	22.35
Bra037568.1-P	Field mustard	cytosol	21.56	22.03
Bra034806.1-P	Field mustard	cytosol	24.17	21.84
Bra022347.1-P	Field mustard	cytosol	21.8	21.7
Bra001717.1-P	Field mustard	cytosol	21.56	21.46

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	EnsemblPlantsGene:Bra039752
EnsemblPlants:Bra039752.1	EnsemblPlants:Bra039752.1-P	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009719	GO:GO:0009987	GO:GO:0010200
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083
UniProt:M4FF80	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF61	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0002545B1B	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

AT1G66160 (E=1e-162) ATCMPG1, CMPG1 | U-box domain-containing protein

Coordinates

chrA02:+:9751914..9753182

Molecular Weight (calculated)

46675.9 Da

IEP (calculated)

6.619

GRAVY (calculated)

-0.037

Length

422 amino acids

Sequence
(BLAST)

001: MRRRGGAKKD ILTPAMSSSE EEEEEIVIPS QFQCPISYDL MKDPVIIASG ITYDRENIEK WFESGNQTCP VTNTVLATLE QTPNHAIRRM IQEWCVAKGS
101: SLDRVPTPRV PISSHQAIEI CGKLLSATRR GDHVVCVEMV EKMKRLGQES ERNTKCFKAN GVGLVLCVCF NAFSENANAS ELLEDVLLLL TWMFPIGSEG
201: QANLTSTTSF TRIVGFLKSG DQNAAFLVKE LLSLDEAIVH KLAAINGVFD ALVKSIRDSS SLTSIFHMIS AKPETTSRFM ELGLVNSTVE MLVDSENSVC
301: EKALLVLDAI CESNEGRTIV RGNELVMPIL VKKILKISEF AKKSLVSVMW KICKSGDGSE VEEALRLGAF KKLVVMLQVG CGEGTKEKVT ELLKMMNRHM
401: KMNGFVDVSD SSIEFKHLKK PS

Best Arabidopsis Sequence Match ( AT1G66160.1 )
(BLAST)

001: MGLSLRVRRR GGSVSKKEII PVTSCSEEVE ITIPSQFQCP ISYELMKDPV IIASGITYDR ENIEKWFESG YQTCPVTNTV LTSLEQIPNH TIRRMIQGWC
101: GSSLGGGIER IPTPRVPVTS HQVSEICERL SAATRRGDYA ACMEMVTKMT RLGKESERNR KCVKENGAGL VLCVCFDAFS ENANASLLLE ETVSVLTWML
201: PIGLEGQSKL TTTSSFNRLV ELLRNGDQNA AFLIKELLEL NVTHVHALTK INGVQEAFMK SINRDSTCVN SLISIHHMIL TNQETVSRFL ELDLVNITVE
301: MLVDSENSVC EKALTVLNVI CETKEGREKV RRNKLVIPIL VKKILKISEK KDLVSVMWKV CKSGDGSEVE EALRLGAFKK LVVMLQVGCG EGTKEKVTEL
401: LKMMNKVMKM NGFVDRSYSS SIEFKHVKKP F

Arabidopsis Description

PUB20U-box domain-containing protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8D1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.