Factsheet for TraesCS6A01G312600.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 6
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	endoplasmic reticulum, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G292200.1	Wheat	mitochondrion	96.26	96.48
TraesCS6B01G342800.1	Wheat	mitochondrion	94.29	94.49
HORVU6Hr1G077120.1	Barley	plastid	91.43	81.25
Os02t0738200-01	Rice	mitochondrion	74.07	73.9
EES05563	Sorghum	mitochondrion	74.07	72.94
Zm00001d017976_P001	Maize	mitochondrion	70.77	71.24
GSMUA_Achr6P02470_001	Banana	mitochondrion	44.4	53.16
GSMUA_Achr7P18640_001	Banana	mitochondrion	42.64	51.19
GSMUA_Achr6P11310_001	Banana	cytosol	42.64	51.05
GSMUA_Achr10P...	Banana	cytosol	41.32	50.0
GSMUA_Achr11P...	Banana	mitochondrion	45.27	48.47
VIT_01s0011g06140.t01	Wine grape	mitochondrion	46.15	47.51
TraesCS5A01G088600.1	Wheat	cytosol	35.6	47.37
GSMUA_Achr3P02030_001	Banana	plastid	40.66	44.15
KRH48691	Soybean	cytosol	42.2	43.94
PGSC0003DMT400058621	Potato	cytosol, mitochondrion	43.52	43.9
Solyc04g008100.1.1	Tomato	cytosol	42.64	43.89
Solyc01g005160.2.1	Tomato	mitochondrion	43.08	43.56
KRH39018	Soybean	mitochondrion	41.54	43.15
KRH30918	Soybean	mitochondrion	41.1	42.99
KRG97963	Soybean	mitochondrion	40.66	42.92
PGSC0003DMT400075778	Potato	mitochondrion	41.54	42.76
KRH17309	Soybean	cytosol, mitochondrion	41.1	42.6
KRH72959	Soybean	cytosol, mitochondrion	40.66	42.24
PGSC0003DMT400073836	Potato	cytosol	36.26	39.38
Solyc11g006030.1.1	Tomato	cytosol	36.04	38.14
AT5G37490.1	Thale cress	cytosol, nucleus, peroxisome	33.85	35.4
Bra025442.1-P	Field mustard	mitochondrion	33.85	35.16
Bra039752.1-P	Field mustard	cytosol	32.31	34.83
CDY27655	Canola	mitochondrion	33.41	34.7
CDX99694	Canola	mitochondrion	33.19	34.47
CDY51529	Canola	mitochondrion	28.35	34.4
CDY16432	Canola	cytosol	32.31	34.35
AT3G02840.1	Thale cress	mitochondrion	28.35	34.04
CDY50319	Canola	cytosol	31.87	33.96
CDX92016	Canola	mitochondrion	27.25	33.7
CDY28714	Canola	mitochondrion	27.69	33.6
AT1G66160.1	Thale cress	cytosol	31.65	33.41
Bra040605.1-P	Field mustard	mitochondrion	27.47	33.33
CDX74232	Canola	cytosol, extracellular, mitochondrion, plastid	26.81	33.15
Bra001067.1-P	Field mustard	mitochondrion	26.81	33.15
TraesCS3A01G376900.1	Wheat	cytosol	28.79	31.34
TraesCS6A01G382300.1	Wheat	cytosol	27.69	29.86
TraesCS6A01G382800.1	Wheat	cytosol	27.69	29.86
TraesCS6A01G256700.1	Wheat	extracellular	26.37	29.48
TraesCS2A01G298000.1	Wheat	cytosol	27.69	29.23
TraesCS6A01G263700.1	Wheat	cytosol	25.27	26.74
TraesCS7A01G399900.1	Wheat	extracellular, vacuole	21.98	26.11
TraesCS2A01G307000.1	Wheat	cytosol	22.2	26.1
TraesCS6A01G176800.1	Wheat	cytosol	23.96	25.23
TraesCS2A01G450300.1	Wheat	cytosol	22.86	24.94
TraesCS4A01G060800.1	Wheat	cytosol	24.4	24.18
TraesCS2A01G298600.1	Wheat	cytosol, mitochondrion, plastid	23.08	23.81
TraesCS1A01G274800.1	Wheat	mitochondrion	23.08	23.18

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF107	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS6A01G312600	EnsemblPlants:TraesCS6A01G312600.1	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
TIGR:cd16664	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6A:+:549321880..549323247

Molecular Weight (calculated)

48974.6 Da

IEP (calculated)

8.374

GRAVY (calculated)

0.086

Length

455 amino acids

Sequence
(BLAST)

001: MVTPLPRFRA RGFRGAARGA PAEVPLAVRR TWQQPMLVAA AAEPEPAVPT HFLCPISLDM MRDPVTAPTG ITYDRESVEG WLERGHATCP VTGRPLRLEE
101: LVPNHATRRV IQEWCVANRG LGIERVPTPR VPVSAFDASE LLEAVCAAAR RGDGPRCREL VARARALGKE SERNRRCFVS ASAARALSST YCHLAGQRVV
201: PATALEEILA AMVVFLPLDE ESRRHIASPA SLGSVVSILS HSEPLARVSA VVVLREIASS SDRQCLEAMS KTTGIYAALV KLLEKPVSPQ ATKAALVTAY
301: YLVTHTELAA SCLVDLGAVR LLLELLVDAD KGATEKALAL LDGLLLTSKG RDEAYAQALA VPVIVKKMQH VSDMATEFAV SALWRLCKNS PAEGGGCKAE
401: ALQVGAFQKL LLLLQVGCEG ATKERASELL RILNGSRDGA ECIDTLDFKA LKRPF

Best Arabidopsis Sequence Match ( AT5G37490.1 )
(BLAST)

001: MGFLWRTRSN EKKITPVLSW PESEPESEIT IPPEFQCPIS IDLMKDPVII STGITYDRVS IETWINSGNK TCPVTNTVLT TFDQIPNHTI RKMIQGWCVE
101: KGSPLIQRIP TPRVPLMPCE VYEISRKLSS ATRRGDYEKC GVIIEKIKKL GDESEKNRKC VNENSVGWVL CDCFDKFSGD EKLTFMLNEI LSLLTWMFPI
201: GLEGISKLAS ATSFRCVAGL LKSTDDSVRQ NAAFIMKEIL SLDETRVHSF AVENGVAEAL VKLIRDSVSS SSTKSSLIAI YQMVLQKPEI ASEFLEIGLV
301: SITVEMIVDA ENSVCEKALA VLDAICETEH GREEVRKNAL VMPLLVKKIA KVSELATRSS MSMILKLWKT GNTVAVEDAV RLGAFQKVLL VLQVGYGEET
401: KEKATELLKM MNTQMKLMSD CVDSLKEFKY IKKPF

Arabidopsis Description

PUB21U-box domain-containing protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q5PNY6]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.