Factsheet for TraesCS7A01G399900.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, vacuole

Predictor Summary:

extracellular 4
endoplasmic reticulum 3
vacuole 4
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, vacuole
Any Predictor:	cytosol, secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G300000.1	Wheat	cytosol, extracellular, nucleus	94.52	94.27
TraesCS7D01G393700.1	Wheat	extracellular, vacuole	93.99	94.24
HORVU7Hr1G093780.1	Barley	cytosol, endoplasmic reticulum, extracellular	90.34	88.49
GSMUA_Achr7P23310_001	Banana	cytosol, peroxisome, plastid	44.91	43.22
GSMUA_Achr2P20690_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	44.39	42.39
TraesCS2A01G307000.1	Wheat	cytosol	40.47	40.05
VIT_04s0044g01460.t01	Wine grape	cytosol	40.99	39.35
KRH53906	Soybean	cytosol	37.6	36.55
KRH40934	Soybean	cytosol	36.81	36.34
KRH64033	Soybean	cytosol	37.08	36.13
KRH59579	Soybean	cytosol	34.73	35.56
PGSC0003DMT400060272	Potato	cytosol	37.08	35.15
Solyc05g056500.1.1	Tomato	cytosol	36.55	34.91
TraesCS3A01G376900.1	Wheat	cytosol	28.98	26.55
TraesCS6A01G256700.1	Wheat	extracellular	27.94	26.29
TraesCS2A01G298600.1	Wheat	cytosol, mitochondrion, plastid	28.72	24.94
TraesCS4A01G060800.1	Wheat	cytosol	29.5	24.62
TraesCS6A01G382300.1	Wheat	cytosol	26.63	24.17
TraesCS6A01G382800.1	Wheat	cytosol	25.85	23.46
TraesCS2A01G298000.1	Wheat	cytosol	25.33	22.51
TraesCS6A01G176800.1	Wheat	cytosol	24.8	21.99
TraesCS6A01G312600.1	Wheat	mitochondrion	26.11	21.98
TraesCS2A01G450300.1	Wheat	cytosol	23.24	21.34
TraesCS1A01G274800.1	Wheat	mitochondrion	24.8	20.97
TraesCS6A01G263700.1	Wheat	cytosol	23.5	20.93
TraesCS5A01G088600.1	Wheat	cytosol	18.02	20.18

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.2	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF103	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:TraesCS7A01G399900	EnsemblPlants:TraesCS7A01G399900.1	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
TIGR:cd16664	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr7A:+:579732725..579733876

Molecular Weight (calculated)

40551.0 Da

IEP (calculated)

8.664

GRAVY (calculated)

0.342

Length

383 amino acids

Sequence
(BLAST)

001: MMLIPEVFLC PISLDLMSDP VTLLPTGQTY DRPSIRRWLA AGHRTCPVTM RPLPHHTSGL LAPNGTLKHL IDRWLLLADL ALPTLRDNLL DAAAAAPDSS
101: PTVAAVETLR IVRSLSPPGF CALLLRLLML RSSDDVLAEL ALDCLLASPS TRELADALQE EKKLASSLAF LLRQGRPKIK IGLCRLIHTV GAVAVDAVVA
201: LGRSEPVMGA LAALVRDDTG GGASDAALRA MCSLCSSDLA SREAAVAAGA VDALLSYISN GGSRKRPSSH ALWTLALETL ELVLVSVDAG RQAMYARPGA
301: TAVLVKMVFM VPSRQDRAGG GGSEHAIGSL LVACRESAEA RVDAINAGLL TRLLLLLQSQ CSPRAKANAM ALLKLLRAIW ARH

Best Arabidopsis Sequence Match ( AT3G19380.1 )
(BLAST)

001: MPRNIEPLDL GIQIPYHFRC PISLELMQDP VTVCTGQTYD RASIESWVSI GNNTTCPVTR APLSDFTLIP NHTLRRLIQE WCVANRSNGV ERIPTPKQPA
101: DPTSVRALLS QASAITGTHV SVRSRAAALR RLRGFARDSD KNRVLIAAHN ATEILIKILF SETTSSELVS ESLALLVMLP ITEPNQFVSI SSDPGRVEFL
201: TRLLFDSSIE TRVNAAALIE IVSTGTKSAD LKGSISNSES VFEGVLDLLR NPISSRRALK IGIKTLFALC SVKSTRHIAI TAGAPEILID RLAADFDRCD
301: TERALATVEL LCRTPEGCAA FGEHALTVPL LVKTILRVSD RATEYAAGAL LALCTAEERW REEAAGAGVV VQLLLMVQSE CTERAKKKAQ KLLKLLRDSW
401: PDYNSFANSD DFGCSSQVVP F

Arabidopsis Description

PUB25U-box domain-containing protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT79]
SUBAcon: [golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.