Factsheet for Solyc05g056500.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060272	Potato	cytosol	93.52	92.82
KRH64033	Soybean	cytosol	50.87	51.91
VIT_04s0044g01460.t01	Wine grape	cytosol	51.12	51.38
KRH59579	Soybean	cytosol	47.38	50.8
KRH53906	Soybean	cytosol	49.88	50.76
KRH40934	Soybean	cytosol	48.88	50.52
HORVU2Hr1G076490.1	Barley	mitochondrion	9.98	45.98
GSMUA_Achr7P23310_001	Banana	cytosol, peroxisome, plastid	41.15	41.46
GSMUA_Achr2P20690_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	40.15	40.15
TraesCS2A01G307000.1	Wheat	cytosol	37.16	38.5
TraesCS2B01G323600.1	Wheat	cytosol	37.91	38.0
TraesCS2D01G305400.1	Wheat	cytosol	37.66	37.75
OQU81614	Sorghum	cytosol	37.41	37.69
Zm00001d003624_P001	Maize	cytosol	37.16	37.25
TraesCS7A01G399900.1	Wheat	extracellular, vacuole	34.91	36.55
TraesCS7B01G300000.1	Wheat	cytosol, extracellular, nucleus	34.91	36.46
TraesCS7D01G393700.1	Wheat	extracellular, vacuole	33.92	35.6
HORVU7Hr1G093780.1	Barley	cytosol, endoplasmic reticulum, extracellular	34.41	35.29
Os04t0437300-01	Rice	cytosol	37.16	34.98
Solyc01g107980.2.1	Tomato	cytosol	28.68	27.71
Solyc11g005700.1.1	Tomato	cytosol	28.68	27.38
Solyc01g007040.2.1	Tomato	cytosol, nucleus, vacuole	11.97	26.82
Solyc01g005160.2.1	Tomato	mitochondrion	25.44	22.67
Solyc04g071030.1.1	Tomato	cytosol	23.69	22.25
Solyc11g068920.1.1	Tomato	cytosol	21.95	21.78
Solyc01g007000.2.1	Tomato	cytosol, nucleus, vacuole	21.95	21.52
Solyc04g008100.1.1	Tomato	cytosol	23.69	21.49
Solyc11g068940.1.1	Tomato	cytosol	22.44	21.28
Solyc01g009330.1.1	Tomato	cytosol	22.44	21.13
Solyc01g007010.2.1	Tomato	cytosol	21.45	21.08
Solyc01g009320.1.1	Tomato	cytosol	21.95	21.05
Solyc04g077610.2.1	Tomato	cytosol	21.95	21.0
Solyc01g080920.2.1	Tomato	cytosol	21.2	20.78
Solyc01g007050.1.1	Tomato	cytosol	21.7	20.67
Solyc01g007020.2.1	Tomato	cytosol	20.7	20.34
Solyc06g074140.1.1	Tomato	cytosol	21.2	20.24
Solyc11g006030.1.1	Tomato	cytosol	21.7	20.23
Solyc01g007030.2.1	Tomato	cytosol	9.48	18.01

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	UniProt:K4C2X4	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF103
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc05g056500.1	EnsemblPlants:Solyc05g056500.1.1	UniParc:UPI0002765920
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:K4C2X4]

Coordinates

chr5:+:65769827..65771032

Molecular Weight (calculated)

45194.4 Da

IEP (calculated)

5.342

GRAVY (calculated)

0.085

Length

401 amino acids

Sequence
(BLAST)

001: MKEPEVGIPI LFRCPISLDL FKDPVTLCTG QTYDRSSIEK WLSCGNLTCP VTMQKLHDST IVPNTTLRHL IDRWLQINSS HGYDLDYFQT VDDSFVVLKH
101: NLQSKESTLE SKVEALDKVL ALSKDLPFEN CPLIQLDFFQ MILELALNDA DERSSFEENV MFVEKALVCG LKLLPFSDLG TLNMLKQDES KFTILFKKGS
201: FMIKKSLCHY IVAISSSLQL KELLVMFGKS KILVQELVHL IENKLDGYEE SIKALSALSS VEQNREVIAK ENAVKALITY IVNAPKCEYR SLFGLVMAMK
301: TIEALLVVES AIEDVLDHPN GVSEIVKMVF RVSSDNEASE SAMNCLIILC QDFINAREEA ICSGILTKLL LLLQSQCSER TKNKARMLLK LLRSMCNGDT
401: K

Best Arabidopsis Sequence Match ( AT3G19380.1 )
(BLAST)

001: MPRNIEPLDL GIQIPYHFRC PISLELMQDP VTVCTGQTYD RASIESWVSI GNNTTCPVTR APLSDFTLIP NHTLRRLIQE WCVANRSNGV ERIPTPKQPA
101: DPTSVRALLS QASAITGTHV SVRSRAAALR RLRGFARDSD KNRVLIAAHN ATEILIKILF SETTSSELVS ESLALLVMLP ITEPNQFVSI SSDPGRVEFL
201: TRLLFDSSIE TRVNAAALIE IVSTGTKSAD LKGSISNSES VFEGVLDLLR NPISSRRALK IGIKTLFALC SVKSTRHIAI TAGAPEILID RLAADFDRCD
301: TERALATVEL LCRTPEGCAA FGEHALTVPL LVKTILRVSD RATEYAAGAL LALCTAEERW REEAAGAGVV VQLLLMVQSE CTERAKKKAQ KLLKLLRDSW
401: PDYNSFANSD DFGCSSQVVP F

Arabidopsis Description

PUB25U-box domain-containing protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT79]
SUBAcon: [golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.