Factsheet for Solyc01g007040.2.1

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g123870.2.1
Solyc08g066070.1.1	golgi
Solyc08g078700.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35930.1	Solyc08g078700.2.1	AT4G25200.1	21798944
AT3G52450.1	Solyc08g066070.1.1	AT1G07000.1	23170036
AT3G52450.1	Solyc08g066070.1.1	AT1G07000.1	23170036
AT3G52450.1	Solyc03g123870.2.1	AT5G49830.2	23170036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G123130.1	Barley	cytosol	14.53	56.52
Solyc01g007000.2.1	Tomato	cytosol, nucleus, vacuole	88.83	38.88
Solyc01g007010.2.1	Tomato	cytosol	84.92	37.25
Solyc01g007020.2.1	Tomato	cytosol	82.68	36.27
GSMUA_Achr11P...	Banana	cytosol	57.54	27.61
VIT_08s0105g00190.t01	Wine grape	cytosol, plastid, vacuole	62.01	27.01
VIT_08s0105g00180.t01	Wine grape	cytosol, plastid, vacuole	61.45	26.76
KRH35744	Soybean	cytosol	61.45	26.25
GSMUA_Achr8P30400_001	Banana	cytosol	53.63	26.16
KRH68014	Soybean	cytosol	59.22	25.24
CDX95337	Canola	cytosol	57.54	25.18
CDX84168	Canola	cytosol	56.98	25.12
Bra017278.1-P	Field mustard	cytosol	57.54	25.0
CDY32070	Canola	cytosol	57.54	25.0
CDY40422	Canola	cytosol	57.54	25.0
CDY59599	Canola	cytosol	56.98	24.94
CDX75084	Canola	cytosol	56.42	24.88
CDX79645	Canola	cytosol	56.42	24.75
Bra023044.1-P	Field mustard	cytosol	56.42	24.69
GSMUA_Achr10P...	Banana	cytosol	50.28	24.66
KRG96268	Soybean	cytosol	57.54	24.58
KRG96257	Soybean	cytosol	57.54	24.58
KRH32856	Soybean	cytosol	57.54	24.52
KRH72176	Soybean	cytosol	56.98	24.4
CDX84587	Canola	cytosol	55.31	24.21
Bra012803.1-P	Field mustard	cytosol	56.98	24.11
AT3G52450.1	Thale cress	cytosol	58.1	23.91
Bra006925.1-P	Field mustard	cytosol	57.54	23.68
AT2G35930.1	Thale cress	cytosol	54.19	23.6
Bra033430.1-P	Field mustard	cytosol	55.87	23.58
CDY23218	Canola	cytosol	51.96	23.48
CDX78096	Canola	cytosol	50.28	23.14
Bra005309.1-P	Field mustard	cytosol	49.72	23.0
Solyc11g068920.1.1	Tomato	cytosol	50.84	22.52
Solyc01g009330.1.1	Tomato	cytosol	51.4	21.6
GSMUA_Achr7P03220_001	Banana	cytosol	36.87	21.29
PGSC0003DMT400054947	Potato	cytosol	31.28	18.54
TraesCS6D01G367100.1	Wheat	cytosol	43.02	18.33
TraesCS6D01G367600.1	Wheat	cytosol	43.02	18.2
Os02t0539200-01	Rice	cytosol	44.13	17.87
Solyc01g009320.1.1	Tomato	cytosol	41.34	17.7
HORVU0Hr1G003810.1	Barley	cytosol	42.46	17.63
TraesCS2B01G314500.1	Wheat	cytosol	42.46	17.63
TraesCS6B01G421900.1	Wheat	cytosol	41.34	17.62
TraesCS6B01G421400.1	Wheat	cytosol	41.34	17.62
TraesCS6B01G420600.1	Wheat	cytosol	41.34	17.62
TraesCS2A01G298000.1	Wheat	cytosol	41.9	17.4
TraesCS2D01G296100.1	Wheat	cytosol	41.9	17.4
Solyc01g007050.1.1	Tomato	cytosol	40.78	17.34
TraesCS6A01G382300.1	Wheat	cytosol	40.78	17.3
TraesCS6A01G382800.1	Wheat	cytosol	40.78	17.3
EES06927	Sorghum	cytosol	40.78	17.22
OQU85086	Sorghum	cytosol	40.78	17.1
Zm00001d001769_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	37.43	17.09
Solyc11g068940.1.1	Tomato	cytosol	40.22	17.02
Os04t0686000-01	Rice	cytosol	38.55	16.71
Zm00001d016730_P001	Maize	cytosol	40.22	16.51
EES13136	Sorghum	cytosol	39.11	16.43
GSMUA_Achr5P01000_001	Banana	cytosol	32.4	16.34
Zm00001d003745_P001	Maize	nucleus	40.78	16.29
KXG26241	Sorghum	cytosol	41.34	16.02
HORVU6Hr1G089560.1	Barley	plastid	40.22	15.96
Solyc06g074140.1.1	Tomato	cytosol	37.43	15.95
HORVU6Hr1G089590.1	Barley	plastid	40.22	15.93
Solyc01g107980.2.1	Tomato	cytosol	36.31	15.66
Solyc11g006030.1.1	Tomato	cytosol	37.43	15.58
Solyc01g005160.2.1	Tomato	mitochondrion	39.11	15.56
Os01t0865700-00	Rice	plastid	35.2	15.48
Solyc01g080920.2.1	Tomato	cytosol	32.96	14.43
TraesCS3B01G409400.1	Wheat	cytosol	33.52	14.39
TraesCS3D01G370000.1	Wheat	cytosol	33.52	14.35
TraesCS3A01G376900.1	Wheat	cytosol	32.96	14.11
HORVU3Hr1G083500.1	Barley	cytosol	32.4	14.04
Solyc04g008100.1.1	Tomato	cytosol	34.64	14.03
EES03937	Sorghum	plastid	31.28	13.73
Zm00001d042738_P001	Maize	cytosol	30.73	13.48
TraesCS6B01G209000.1	Wheat	cytosol	31.28	13.24
TraesCS6A01G176800.1	Wheat	cytosol	31.28	12.96
HORVU6Hr1G034250.1	Barley	cytosol, nucleus, peroxisome	31.28	12.93
Solyc11g005700.1.1	Tomato	cytosol	30.17	12.86
KXG23010	Sorghum	cytosol	32.4	12.78
TraesCS6D01G167300.1	Wheat	cytosol	30.73	12.7
Solyc04g077610.2.1	Tomato	cytosol	29.61	12.65
TraesCS2D01G594700.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	30.17	12.65
TraesCSU01G036400.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	30.17	12.65
TraesCS2B01G601300.1	Wheat	cytosol	29.61	12.41
Os12t0161100-00	Rice	cytosol	30.17	12.3
GSMUA_Achr9P29630_001	Banana	cytosol	42.46	12.3
Solyc05g056500.1.1	Tomato	cytosol	26.82	11.97
Zm00001d023480_P001	Maize	cytosol	31.84	10.2
Solyc04g071030.1.1	Tomato	cytosol	24.02	10.07
HORVU2Hr1G123050.1	Barley	cytosol	16.2	8.63
Solyc01g007030.2.1	Tomato	cytosol	2.23	1.9

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	UniProt:K4ASS0	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF54
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc01g007040.2	EnsemblPlants:Solyc01g007040.2.1	UniParc:UPI00027626EC
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:K4ASS0]

Coordinates

chr1:-:1583708..1584768

Molecular Weight (calculated)

20238.5 Da

IEP (calculated)

8.318

GRAVY (calculated)

-0.357

Length

179 amino acids

Sequence
(BLAST)

001: MEEIQIPSYF ICPISLEMMK DPVTISTGIT YDRENIEKWT FSAKNNICPV TKQSLITSIE LTPNVTLRRL IQSWCTINAS HGIERFPTPK PPVSKPQIIK
101: LLKEAKSPKM QMKSLKTLRS IASENDANKR CMESAGAMEF LASIINNNSS EVFEEEEGFM STKTKHLASS INSNYLKMD

Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)

001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C

Arabidopsis Description

PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.