Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- endoplasmic reticulum 1
- plasma membrane 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G123130.1 | Barley | cytosol | 10.77 | 100.0 |
| TraesCSU01G036400.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 95.78 | 95.78 |
| TraesCS2B01G601300.1 | Wheat | cytosol | 93.21 | 93.21 |
| HORVU2Hr1G123050.1 | Barley | cytosol | 68.62 | 87.2 |
| Os04t0686000-01 | Rice | cytosol | 62.3 | 64.41 |
| EES13136 | Sorghum | cytosol | 61.83 | 61.97 |
| Zm00001d001769_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome | 52.46 | 57.14 |
| GSMUA_Achr7P03220_001 | Banana | cytosol | 33.72 | 46.45 |
| TraesCS3D01G370000.1 | Wheat | cytosol | 45.43 | 46.41 |
| GSMUA_Achr5P01000_001 | Banana | cytosol | 37.47 | 45.07 |
| PGSC0003DMT400055045 | Potato | cytosol | 21.55 | 43.6 |
| Solyc01g007030.2.1 | Tomato | cytosol | 21.31 | 43.13 |
| TraesCS6D01G367100.1 | Wheat | cytosol | 39.58 | 40.24 |
| TraesCS2D01G296100.1 | Wheat | cytosol | 40.52 | 40.14 |
| TraesCS6D01G367600.1 | Wheat | cytosol | 39.11 | 39.48 |
| KRH22633 | Soybean | cytosol, nucleus | 37.0 | 39.21 |
| VIT_08s0105g00180.t01 | Wine grape | cytosol, plastid, vacuole | 37.7 | 39.17 |
| VIT_08s0105g00190.t01 | Wine grape | cytosol, plastid, vacuole | 37.24 | 38.69 |
| KRH26691 | Soybean | cytosol | 34.43 | 37.98 |
| PGSC0003DMT400054949 | Potato | cytosol | 34.89 | 36.7 |
| Solyc01g007000.2.1 | Tomato | cytosol, nucleus, vacuole | 34.89 | 36.43 |
| CDX84168 | Canola | cytosol | 34.43 | 36.21 |
| KRH32856 | Soybean | cytosol | 35.6 | 36.19 |
| KRH25324 | Soybean | cytosol | 30.68 | 36.09 |
| CDX84587 | Canola | cytosol | 34.43 | 35.94 |
| Bra023044.1-P | Field mustard | cytosol | 34.43 | 35.94 |
| CDY32070 | Canola | cytosol | 34.66 | 35.92 |
| CDX79645 | Canola | cytosol | 33.96 | 35.54 |
| AT2G35930.1 | Thale cress | cytosol | 34.19 | 35.52 |
| CDX78096 | Canola | cytosol | 32.32 | 35.48 |
| PGSC0003DMT400055049 | Potato | cytosol, nucleus, plasma membrane | 33.72 | 35.47 |
| CDX75084 | Canola | cytosol | 33.72 | 35.47 |
| CDX95337 | Canola | cytosol | 33.96 | 35.45 |
| Bra017278.1-P | Field mustard | cytosol | 34.19 | 35.44 |
| CDY40422 | Canola | cytosol | 34.19 | 35.44 |
| PGSC0003DMT400055050 | Potato | cytosol | 32.32 | 35.2 |
| KRH72176 | Soybean | cytosol | 34.43 | 35.17 |
| Bra005309.1-P | Field mustard | cytosol | 31.85 | 35.14 |
| Solyc01g007020.2.1 | Tomato | cytosol | 33.49 | 35.05 |
| PGSC0003DMT400055051 | Potato | cytosol | 32.32 | 35.03 |
| Solyc01g009330.1.1 | Tomato | cytosol | 34.89 | 34.98 |
| CDY23218 | Canola | cytosol | 32.32 | 34.85 |
| KRG96257 | Soybean | cytosol | 34.19 | 34.84 |
| Solyc01g007010.2.1 | Tomato | cytosol | 33.26 | 34.8 |
| VIT_06s0009g00320.t01 | Wine grape | cytosol | 33.72 | 34.78 |
| CDY59599 | Canola | cytosol | 33.26 | 34.72 |
| KRG96268 | Soybean | cytosol | 33.96 | 34.61 |
| KRH68014 | Soybean | cytosol | 33.96 | 34.52 |
| Solyc11g068920.1.1 | Tomato | cytosol | 32.55 | 34.41 |
| PGSC0003DMT400050493 | Potato | cytosol | 32.32 | 34.16 |
| KRH35744 | Soybean | cytosol | 33.49 | 34.13 |
| Bra012803.1-P | Field mustard | cytosol | 33.49 | 33.81 |
| Bra033430.1-P | Field mustard | cytosol | 33.26 | 33.49 |
| PGSC0003DMT400054947 | Potato | cytosol | 23.65 | 33.44 |
| AT3G52450.1 | Thale cress | cytosol | 33.96 | 33.33 |
| Bra006925.1-P | Field mustard | cytosol | 33.49 | 32.87 |
| PGSC0003DMT400054948 | Potato | cytosol | 21.78 | 32.63 |
| PGSC0003DMT400038197 | Potato | cytosol | 34.43 | 32.38 |
| TraesCS6D01G167300.1 | Wheat | cytosol | 31.15 | 30.72 |
| Solyc01g007040.2.1 | Tomato | cytosol, nucleus, vacuole | 12.65 | 30.17 |
| TraesCS2D01G449900.1 | Wheat | cytosol | 28.1 | 28.71 |
| TraesCS7D01G393700.1 | Wheat | extracellular, vacuole | 24.59 | 27.49 |
| TraesCS6D01G251200.1 | Wheat | cytosol | 26.7 | 26.39 |
| TraesCS2D01G305400.1 | Wheat | cytosol | 24.59 | 26.25 |
| TraesCS6D01G237900.1 | Wheat | extracellular | 24.82 | 26.04 |
| TraesCS2D01G296700.1 | Wheat | cytosol, mitochondrion, plastid | 26.46 | 25.62 |
| TraesCS7D01G201600.1 | Wheat | mitochondrion | 26.23 | 25.34 |
| GSMUA_Achr9P29630_001 | Banana | cytosol | 36.07 | 24.92 |
| TraesCS6D01G292200.1 | Wheat | mitochondrion | 24.82 | 23.35 |
| TraesCS4D01G229900.1 | Wheat | mitochondrion | 23.42 | 22.73 |
| TraesCS1D01G274600.1 | Wheat | mitochondrion | 22.01 | 20.75 |
| TraesCS4D01G237600.1 | Wheat | cytosol | 22.25 | 20.7 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:ARM-type_fold | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 |
| GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 |
| GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR003613 | InterPro:IPR013083 | PFAM:PF04564 | PFscan:PS51698 |
| PANTHER:PTHR22849 | PANTHER:PTHR22849:SF11 | SMART:SM00504 | SUPFAM:SSF48371 | SUPFAM:SSF57850 | EnsemblPlantsGene:TraesCS2D01G594700 |
| EnsemblPlants:TraesCS2D01G594700.1 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD | TIGR:cd16664 | SEG:seg | : |
Description
No Description!
Coordinates
chr2D:+:648342114..648343568
Molecular Weight (calculated)
45100.6 Da
IEP (calculated)
8.505
GRAVY (calculated)
0.128
Length
427 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEVEVPSYF VCPITLDVMR DPVTLPTGIT YDRHAIHRWL RLAASCPLTK LPVAPDCEPT PNHTLCRLIR SWCALHRPDD AVDHTMKPAP ADRARLAALV
101: SRLADAKNKR PSRVALAALR ELRDVVAEGE CGRELVAAVP GSADALLDVF VSSATSAPEN AAAALDVISS LRLPERCLAR AVDRDGTALV GALVSTLQGH
201: SGSDADAASR ARAAVLLADV TACMAPSRAA SLPEKVFVET ARLLRGDDGM GASTSMATKA ALRVLAGATA HGRNRVKAAE AGAVAVLVDM LLLVNGERRR
301: AWCELALCAL NRLCGCAEGR AALVAHGAGV AAVGAWVAGA SMAASAKAVR VLRSIARHTA TVAVVQEMAA TGAVGKLCLV AASAPEEERQ WCDERTRERA
401: RQTLRLHARA WRSSPCLHPT LQALYPF
101: SRLADAKNKR PSRVALAALR ELRDVVAEGE CGRELVAAVP GSADALLDVF VSSATSAPEN AAAALDVISS LRLPERCLAR AVDRDGTALV GALVSTLQGH
201: SGSDADAASR ARAAVLLADV TACMAPSRAA SLPEKVFVET ARLLRGDDGM GASTSMATKA ALRVLAGATA HGRNRVKAAE AGAVAVLVDM LLLVNGERRR
301: AWCELALCAL NRLCGCAEGR AALVAHGAGV AAVGAWVAGA SMAASAKAVR VLRSIARHTA TVAVVQEMAA TGAVGKLCLV AASAPEEERQ WCDERTRERA
401: RQTLRLHARA WRSSPCLHPT LQALYPF
001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
Arabidopsis Description
PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.