Factsheet for PGSC0003DMT400055051

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400012249
PGSC0003DMT400023748
PGSC0003DMT400065456	golgi

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35930.1	PGSC0003DMT400012249	AT4G25200.1	21798944
AT3G52450.1	PGSC0003DMT400065456	AT1G07000.1	23170036
AT3G52450.1	PGSC0003DMT400065456	AT1G07000.1	23170036
AT3G52450.1	PGSC0003DMT400023748	AT5G49830.2	23170036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055050	Potato	cytosol	96.95	97.45
PGSC0003DMT400055045	Potato	cytosol	52.03	97.16
PGSC0003DMT400054947	Potato	cytosol	72.33	94.37
PGSC0003DMT400054949	Potato	cytosol	94.92	92.12
PGSC0003DMT400055049	Potato	cytosol, nucleus, plasma membrane	93.4	90.64
Solyc01g007000.2.1	Tomato	cytosol, nucleus, vacuole	93.65	90.22
PGSC0003DMT400054948	Potato	cytosol	64.21	88.77
Solyc01g007010.2.1	Tomato	cytosol	91.88	88.73
Solyc01g007020.2.1	Tomato	cytosol	90.86	87.75
VIT_08s0105g00190.t01	Wine grape	cytosol, plastid, vacuole	65.23	62.53
VIT_08s0105g00180.t01	Wine grape	cytosol, plastid, vacuole	64.97	62.29
KRH35744	Soybean	cytosol	65.74	61.81
KRH68014	Soybean	cytosol	64.72	60.71
KRG96257	Soybean	cytosol	64.21	60.38
KRG96268	Soybean	cytosol	63.96	60.14
KRH32856	Soybean	cytosol	60.66	56.9
KRH72176	Soybean	cytosol	59.39	55.98
Bra005309.1-P	Field mustard	cytosol	54.82	55.81
CDY59599	Canola	cytosol	56.6	54.52
CDX78096	Canola	cytosol	53.55	54.24
CDX95337	Canola	cytosol	56.09	54.03
CDX84168	Canola	cytosol	55.33	53.69
CDX79645	Canola	cytosol	55.33	53.43
Bra017278.1-P	Field mustard	cytosol	55.84	53.4
CDY40422	Canola	cytosol	55.84	53.4
CDY32070	Canola	cytosol	55.84	53.4
CDX75084	Canola	cytosol	54.82	53.2
Bra023044.1-P	Field mustard	cytosol	55.08	53.06
CDX84587	Canola	cytosol	54.57	52.57
AT2G35930.1	Thale cress	cytosol	54.57	52.31
GSMUA_Achr11P...	Banana	cytosol	49.49	52.28
CDY23218	Canola	cytosol	52.28	52.02
Bra012803.1-P	Field mustard	cytosol	55.58	51.77
GSMUA_Achr7P03220_001	Banana	cytosol	40.36	51.29
Bra006925.1-P	Field mustard	cytosol	56.6	51.26
AT3G52450.1	Thale cress	cytosol	56.09	50.8
Bra033430.1-P	Field mustard	cytosol	54.06	50.24
GSMUA_Achr10P...	Banana	cytosol	46.45	50.14
GSMUA_Achr8P30400_001	Banana	cytosol	46.7	50.14
PGSC0003DMT400050493	Potato	cytosol	51.27	50.0
PGSC0003DMT400038197	Potato	cytosol	55.33	48.02
GSMUA_Achr5P01000_001	Banana	cytosol	41.37	45.92
PGSC0003DMT400038196	Potato	cytosol	44.92	42.34
OQU85086	Sorghum	cytosol	45.43	41.92
TraesCS6D01G367100.1	Wheat	cytosol	44.42	41.67
Os04t0686000-01	Rice	cytosol	43.65	41.65
TraesCS6D01G367600.1	Wheat	cytosol	44.67	41.61
EES06927	Sorghum	cytosol	44.67	41.51
PGSC0003DMT400015179	Potato	cytosol	42.13	41.19
TraesCS6B01G421400.1	Wheat	cytosol	43.65	40.95
Os02t0539200-01	Rice	cytosol	45.69	40.72
TraesCS6B01G420600.1	Wheat	cytosol	43.4	40.71
TraesCS6B01G421900.1	Wheat	cytosol	43.4	40.71
Os01t0865700-00	Rice	plastid	41.88	40.54
TraesCS6A01G382800.1	Wheat	cytosol	43.4	40.52
TraesCS6A01G382300.1	Wheat	cytosol	43.4	40.52
TraesCS2B01G314500.1	Wheat	cytosol	43.91	40.14
HORVU0Hr1G003810.1	Barley	cytosol	43.65	39.91
TraesCS2A01G298000.1	Wheat	cytosol	43.4	39.68
TraesCS2D01G296100.1	Wheat	cytosol	43.4	39.68
EES13136	Sorghum	cytosol	42.39	39.2
TraesCS3B01G409400.1	Wheat	cytosol	41.37	39.09
TraesCS3D01G370000.1	Wheat	cytosol	41.37	39.0
Zm00001d016730_P001	Maize	cytosol	42.89	38.76
TraesCS3A01G376900.1	Wheat	cytosol	41.12	38.76
HORVU3Hr1G083500.1	Barley	cytosol	40.36	38.5
Zm00001d001769_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	37.82	38.01
EES03937	Sorghum	plastid	39.34	37.99
HORVU6Hr1G089560.1	Barley	plastid	43.4	37.92
HORVU6Hr1G089590.1	Barley	plastid	43.4	37.83
Zm00001d003745_P001	Maize	nucleus	42.64	37.5
KXG26241	Sorghum	cytosol	43.4	37.01
Zm00001d042738_P001	Maize	cytosol	38.32	37.01
HORVU2Hr1G123130.1	Barley	cytosol	4.06	34.78
PGSC0003DMT400054946	Potato	cytosol	37.06	34.68
TraesCS2B01G601300.1	Wheat	cytosol	35.28	32.55
TraesCSU01G036400.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	35.28	32.55
TraesCS2D01G594700.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	35.03	32.32
HORVU2Hr1G123050.1	Barley	cytosol	27.41	32.14
TraesCS6B01G209000.1	Wheat	cytosol	32.74	30.5
TraesCS6D01G167300.1	Wheat	cytosol	32.99	30.02
PGSC0003DMT400004594	Potato	cytosol	30.96	29.98
TraesCS6A01G176800.1	Wheat	cytosol	32.74	29.86
PGSC0003DMT400073836	Potato	cytosol	31.73	29.83
HORVU6Hr1G034250.1	Barley	cytosol, nucleus, peroxisome	32.23	29.33
PGSC0003DMT400075778	Potato	mitochondrion	31.98	28.51
KXG23010	Sorghum	cytosol	31.98	27.75
GSMUA_Achr9P29630_001	Banana	cytosol	43.15	27.51
PGSC0003DMT400058621	Potato	cytosol, mitochondrion	30.96	27.05
Os12t0161100-00	Rice	cytosol	29.44	26.42
PGSC0003DMT400066588	Potato	cytosol	27.41	26.02
PGSC0003DMT400065698	Potato	cytosol	23.86	22.38
PGSC0003DMT400012566	Potato	cytosol	23.86	20.94
Zm00001d023480_P001	Maize	cytosol	28.43	20.04
PGSC0003DMT400060272	Potato	cytosol	19.54	19.06
PGSC0003DMT400002079	Potato	cytosol	19.29	18.18

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	UniProt:M1BX99	PFAM:PF04564	EnsemblPlantsGene:PGSC0003DMG400021360	PGSC:PGSC0003DMG400021360	EnsemblPlants:PGSC0003DMT400055051
PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF54	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI0002963C9F	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

U-box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021360]

Coordinates

chr1:+:2879354..2880631

Molecular Weight (calculated)

43843.7 Da

IEP (calculated)

8.781

GRAVY (calculated)

-0.063

Length

394 amino acids

Sequence
(BLAST)

001: MMKDPVTIST GITYDRENIE KWIFSAKNNT CPVTKQSLIT GIELTPNVTL RRFIQSWCTI NASHGIERFP TPKPPVSKPQ IIKLLKEAKS PMMQMKSLKT
101: LRSIASENDA NKRCMESAGA MEFLASIINN NNSNEVFEEE EEGFMSTKDE ALSILYQLKL SEQGLKSLIM SGNGEFIESL THVMQHGSYE SRAYAVMLMK
201: DMFEVSTPTL LLSLKQEFFT QVVQVLRDEI SQKATKASLQ VLVHACPFGR NRVKAAEAGA IRVLVDLLLD SSEKRVCELM LILLDQLCLS AEGRAELLNH
301: PGGLAIVSKK ILRVSKVGSE RAIKILHSIS KFSSTPSVVQ EMLSLGVVAK LCLVLQVDCG SKSKERAREI LKFHAKAWSN SPCIPNNLLS SYPF

Best Arabidopsis Sequence Match ( AT3G52450.1 )
(BLAST)

001: MDQEIEIPSF FLCPISLDIM KDPVIVSTGI TYDRESIEKW LFSGKKNSCP VTKQVITETD LTPNHTLRRL IQSWCTLNAS YGIERIPTPK PPICKSEIEK
101: LIKESSSSHL NQVKCLKRLR QIVSENTTNK RCLEAAEVPE FLANIVSNSV DTYNSPSSSL SSSNLNDMCQ SNMLENRFDS SRSLMDEALS VLYHLDTSET
201: ALKSLLNNKK GTNLVKTLTK IMQRGIYESR AYAALLLKKL LEVADPMQII LLERELFGEV IQILHDQISH KATRSAMQIL VITCPWGRNR HKAVEGGTIS
301: MIIELLMDDT FSSERRNSEM AMVVLDMLCQ CAEGRAEFLN HGAAIAVVSK KILRVSQITS ERAVRVLLSV GRFCATPSLL QEMLQLGVVA KLCLVLQVSC
401: GNKTKEKAKE LLKLHARVWR ESPCVPRNLY DSYPA

Arabidopsis Description

PUB22RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VML4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.