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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400012249
PGSC0003DMT400023748
PGSC0003DMT400065456 golgi

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G35930.1 PGSC0003DMT400012249 AT4G25200.1 21798944
AT3G52450.1 PGSC0003DMT400065456 AT1G07000.1 23170036
AT3G52450.1 PGSC0003DMT400065456 AT1G07000.1 23170036
AT3G52450.1 PGSC0003DMT400023748 AT5G49830.2 23170036
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400054947 Potato cytosol 94.31 65.89
PGSC0003DMT400055050 Potato cytosol 97.16 52.3
PGSC0003DMT400055051 Potato cytosol 97.16 52.03
PGSC0003DMT400054949 Potato cytosol 96.68 50.25
PGSC0003DMT400055049 Potato cytosol, nucleus, plasma membrane 94.31 49.01
Solyc01g007010.2.1 Tomato cytosol 94.31 48.77
Solyc01g007000.2.1 Tomato cytosol, nucleus, vacuole 93.84 48.41
Solyc01g007020.2.1 Tomato cytosol 92.89 48.04
VIT_08s0105g00190.t01 Wine grape cytosol, plastid, vacuole 66.82 34.31
VIT_08s0105g00180.t01 Wine grape cytosol, plastid, vacuole 66.82 34.31
KRH68014 Soybean cytosol 67.77 34.05
KRG96257 Soybean cytosol 65.88 33.17
KRH35744 Soybean cytosol 65.88 33.17
KRG96268 Soybean cytosol 65.4 32.94
KRH32856 Soybean cytosol 63.51 31.9
CDX78096 Canola cytosol 58.29 31.62
KRH72176 Soybean cytosol 61.61 31.1
GSMUA_Achr7P03220_001 Banana cytosol 45.02 30.65
CDY59599 Canola cytosol 58.29 30.07
Bra005309.1-P Field mustard cytosol 54.98 29.97
CDX95337 Canola cytosol 57.82 29.83
CDY23218 Canola cytosol 55.92 29.8
AT2G35930.1 Thale cress cytosol 56.4 28.95
PGSC0003DMT400054948 Potato cytosol 38.86 28.77
CDX79645 Canola cytosol 55.45 28.68
Bra017278.1-P Field mustard cytosol 55.92 28.64
CDY40422 Canola cytosol 55.92 28.64
CDY32070 Canola cytosol 55.92 28.64
CDX84587 Canola cytosol 55.45 28.61
Bra023044.1-P Field mustard cytosol 55.45 28.61
CDX84168 Canola cytosol 54.98 28.57
CDX75084 Canola cytosol 54.98 28.57
Bra006925.1-P Field mustard cytosol 58.29 28.28
GSMUA_Achr5P01000_001 Banana cytosol 47.39 28.17
Bra012803.1-P Field mustard cytosol 55.92 27.9
Bra033430.1-P Field mustard cytosol 55.92 27.83
AT3G52450.1 Thale cress cytosol 56.4 27.36
PGSC0003DMT400050493 Potato cytosol 52.13 27.23
GSMUA_Achr10P... Banana cytosol 46.92 27.12
PGSC0003DMT400038197 Potato cytosol 57.35 26.65
GSMUA_Achr11P... Banana cytosol 45.02 25.47
Os04t0686000-01 Rice cytosol 49.29 25.18
Os01t0865700-00 Rice plastid 48.34 25.06
TraesCS3B01G409400.1 Wheat cytosol 49.29 24.94
TraesCS3D01G370000.1 Wheat cytosol 49.29 24.88
TraesCS3A01G376900.1 Wheat cytosol 49.29 24.88
OQU85086 Sorghum cytosol 50.24 24.82
GSMUA_Achr8P30400_001 Banana cytosol 43.13 24.8
TraesCS6B01G421400.1 Wheat cytosol 48.82 24.52
TraesCS6D01G367100.1 Wheat cytosol 48.82 24.52
EES03937 Sorghum plastid 47.39 24.51
HORVU3Hr1G083500.1 Barley cytosol 47.87 24.46
TraesCS6A01G382300.1 Wheat cytosol 48.82 24.41
PGSC0003DMT400038196 Potato cytosol 48.34 24.4
TraesCS6D01G367600.1 Wheat cytosol 48.82 24.35
EES06927 Sorghum cytosol 48.82 24.29
TraesCS6B01G420600.1 Wheat cytosol 48.34 24.29
TraesCS6B01G421900.1 Wheat cytosol 48.34 24.29
TraesCS6A01G382800.1 Wheat cytosol 48.34 24.17
Zm00001d042738_P001 Maize cytosol 46.45 24.02
PGSC0003DMT400015179 Potato cytosol 45.5 23.82
EES13136 Sorghum cytosol 47.39 23.47
Os02t0539200-01 Rice cytosol 48.34 23.08
Zm00001d016730_P001 Maize cytosol 47.39 22.94
HORVU6Hr1G089560.1 Barley plastid 48.82 22.84
HORVU6Hr1G089590.1 Barley plastid 48.82 22.79
TraesCS2A01G298000.1 Wheat cytosol 45.97 22.51
TraesCS2B01G314500.1 Wheat cytosol 45.97 22.51
TraesCS2D01G296100.1 Wheat cytosol 45.5 22.27
HORVU0Hr1G003810.1 Barley cytosol 45.5 22.27
HORVU2Hr1G123050.1 Barley cytosol 35.07 22.02
TraesCSU01G036400.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 44.08 21.78
TraesCS2B01G601300.1 Wheat cytosol 44.08 21.78
TraesCS2D01G594700.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 43.6 21.55
Zm00001d001769_P001 Maize cytosol, endoplasmic reticulum, peroxisome 38.86 20.92
Zm00001d003745_P001 Maize nucleus 44.08 20.76
KXG26241 Sorghum cytosol 45.02 20.56
TraesCS6B01G209000.1 Wheat cytosol 38.39 19.15
TraesCS6D01G167300.1 Wheat cytosol 38.39 18.71
PGSC0003DMT400054946 Potato cytosol 36.49 18.29
TraesCS6A01G176800.1 Wheat cytosol 37.44 18.29
HORVU6Hr1G034250.1 Barley cytosol, nucleus, peroxisome 36.97 18.01
PGSC0003DMT400004594 Potato cytosol 31.75 16.46
Os12t0161100-00 Rice cytosol 33.18 15.95
KXG23010 Sorghum cytosol 34.12 15.86
PGSC0003DMT400073836 Potato cytosol 31.28 15.75
GSMUA_Achr9P29630_001 Banana cytosol 45.5 15.53
PGSC0003DMT400075778 Potato mitochondrion 30.33 14.48
PGSC0003DMT400058621 Potato cytosol, mitochondrion 28.44 13.3
PGSC0003DMT400066588 Potato cytosol 24.64 12.53
PGSC0003DMT400065698 Potato cytosol 23.22 11.67
Zm00001d023480_P001 Maize cytosol 28.91 10.91
PGSC0003DMT400012566 Potato cytosol 21.8 10.24
PGSC0003DMT400060272 Potato cytosol 18.01 9.41
PGSC0003DMT400002079 Potato cytosol 17.06 8.61
HORVU2Hr1G123130.1 Barley cytosol 0.0 0.0
Protein Annotations
EnsemblPlants:PGSC0003DMT400055045EnsemblPlantsGene:PGSC0003DMG400021356Gene3D:1.25.10.10GO:GO:0003674GO:GO:0005488InterPro:ARM-like
InterPro:ARM-type_foldInterPro:IPR011989PANTHER:PTHR22849PANTHER:PTHR22849:SF54PGSC:PGSC0003DMG400021356SUPFAM:SSF48371
UniParc:UPI000294E1EAUniProt:M1BX95MapMan:35.1:::
Description
U-box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021356]
Coordinates
chr1:+:2904989..2905652
Molecular Weight (calculated)
23399.0 Da
IEP (calculated)
10.074
GRAVY (calculated)
0.103
Length
211 amino acids
Sequence
(BLAST)
001: MQHGSYESRA YAVMLMKDMF EVSTPTLLLS LKQEFFTQVV QVLRDEISQK ATKASLQVLV HACPFGRNRV KAAEAGAIRV LVDLLLDSSE KRTCELMLIL
101: LDQLCQSAEG RAKLLNHPGG LAIVSKKILR VSKVGSERAI KILHSISKFS STPSVVQEML SLGVVAKLCL MLQVDCGSKA KERAREILKF HAKAWRNSPC
201: IPNNLLSSYP F
Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)
001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
Arabidopsis Description
PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.