Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G35930.1 | CDX89437 | AT4G25200.1 | 21798944 |
| AT2G35930.1 | CDY03368 | AT4G25200.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75084 | Canola | cytosol | 96.31 | 96.31 |
| CDX79645 | Canola | cytosol | 89.16 | 88.73 |
| CDY40422 | Canola | cytosol | 89.9 | 88.59 |
| CDY32070 | Canola | cytosol | 89.41 | 88.11 |
| CDX84587 | Canola | cytosol | 88.42 | 87.78 |
| AT2G35930.1 | Thale cress | cytosol | 88.42 | 87.35 |
| CDY59599 | Canola | cytosol | 80.79 | 80.2 |
| CDX78096 | Canola | cytosol | 76.6 | 79.95 |
| CDX95337 | Canola | cytosol | 78.82 | 78.24 |
| CDY23218 | Canola | cytosol | 75.86 | 77.78 |
| VIT_08s0105g00190.t01 | Wine grape | cytosol, plastid, vacuole | 60.34 | 59.61 |
| VIT_08s0105g00180.t01 | Wine grape | cytosol, plastid, vacuole | 60.1 | 59.37 |
| Solyc01g007040.2.1 | Tomato | cytosol, nucleus, vacuole | 25.12 | 56.98 |
| KRH68014 | Soybean | cytosol | 58.87 | 56.9 |
| PGSC0003DMT400054949 | Potato | cytosol | 56.9 | 56.9 |
| PGSC0003DMT400055049 | Potato | cytosol, nucleus, plasma membrane | 56.65 | 56.65 |
| Solyc01g007000.2.1 | Tomato | cytosol, nucleus, vacuole | 56.9 | 56.48 |
| Solyc01g007020.2.1 | Tomato | cytosol | 56.16 | 55.88 |
| GSMUA_Achr7P03220_001 | Banana | cytosol | 42.61 | 55.81 |
| KRH72176 | Soybean | cytosol | 57.39 | 55.74 |
| KRH35744 | Soybean | cytosol | 57.39 | 55.61 |
| KRH32856 | Soybean | cytosol | 57.39 | 55.48 |
| PGSC0003DMT400054948 | Potato | cytosol | 38.92 | 55.44 |
| Solyc01g007010.2.1 | Tomato | cytosol | 55.66 | 55.39 |
| PGSC0003DMT400055050 | Potato | cytosol | 53.45 | 55.36 |
| PGSC0003DMT400055051 | Potato | cytosol | 53.69 | 55.33 |
| KRG96257 | Soybean | cytosol | 56.9 | 55.13 |
| PGSC0003DMT400055045 | Potato | cytosol | 28.57 | 54.98 |
| Solyc01g007030.2.1 | Tomato | cytosol | 28.57 | 54.98 |
| KRG96268 | Soybean | cytosol | 56.65 | 54.89 |
| HORVU2Hr1G123130.1 | Barley | cytosol | 6.16 | 54.35 |
| GSMUA_Achr5P01000_001 | Banana | cytosol | 44.83 | 51.27 |
| PGSC0003DMT400054947 | Potato | cytosol | 37.93 | 50.99 |
| GSMUA_Achr11P... | Banana | cytosol | 45.32 | 49.33 |
| GSMUA_Achr10P... | Banana | cytosol | 44.09 | 49.04 |
| GSMUA_Achr8P30400_001 | Banana | cytosol | 43.6 | 48.23 |
| EES06927 | Sorghum | cytosol | 47.04 | 45.05 |
| Os04t0686000-01 | Rice | cytosol | 45.81 | 45.04 |
| TraesCS6B01G421900.1 | Wheat | cytosol | 46.55 | 45.0 |
| TraesCS6D01G367100.1 | Wheat | cytosol | 46.55 | 45.0 |
| OQU85086 | Sorghum | cytosol | 47.29 | 44.96 |
| TraesCS6D01G367600.1 | Wheat | cytosol | 46.31 | 44.44 |
| TraesCS6A01G382300.1 | Wheat | cytosol | 45.81 | 44.08 |
| TraesCS6B01G421400.1 | Wheat | cytosol | 45.57 | 44.05 |
| TraesCS6B01G420600.1 | Wheat | cytosol | 45.32 | 43.81 |
| TraesCS6A01G382800.1 | Wheat | cytosol | 45.32 | 43.6 |
| Os01t0865700-00 | Rice | plastid | 43.35 | 43.24 |
| Os02t0539200-01 | Rice | cytosol | 47.04 | 43.21 |
| EES03937 | Sorghum | plastid | 43.1 | 42.89 |
| Zm00001d042738_P001 | Maize | cytosol | 43.1 | 42.89 |
| HORVU6Hr1G089560.1 | Barley | plastid | 46.8 | 42.13 |
| TraesCS3D01G370000.1 | Wheat | cytosol | 43.35 | 42.11 |
| HORVU6Hr1G089590.1 | Barley | plastid | 46.8 | 42.04 |
| TraesCS3B01G409400.1 | Wheat | cytosol | 43.1 | 41.97 |
| HORVU3Hr1G083500.1 | Barley | cytosol | 42.61 | 41.89 |
| TraesCS3A01G376900.1 | Wheat | cytosol | 43.1 | 41.87 |
| EES13136 | Sorghum | cytosol | 43.84 | 41.78 |
| Zm00001d016730_P001 | Maize | cytosol | 44.83 | 41.74 |
| TraesCS2B01G314500.1 | Wheat | cytosol | 44.09 | 41.53 |
| TraesCS2A01G298000.1 | Wheat | cytosol | 43.84 | 41.3 |
| TraesCS2D01G296100.1 | Wheat | cytosol | 43.35 | 40.84 |
| Zm00001d003745_P001 | Maize | nucleus | 44.83 | 40.62 |
| HORVU0Hr1G003810.1 | Barley | cytosol | 42.86 | 40.37 |
| KXG26241 | Sorghum | cytosol | 45.32 | 39.83 |
| Zm00001d001769_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome | 37.68 | 39.03 |
| CDY47911 | Canola | cytosol | 39.9 | 38.39 |
| CDY67531 | Canola | cytosol | 40.64 | 36.91 |
| CDY08490 | Canola | cytosol | 39.9 | 36.65 |
| CDY01063 | Canola | cytosol | 39.66 | 36.59 |
| CDY53920 | Canola | cytosol | 39.16 | 36.47 |
| CDX73849 | Canola | cytosol | 39.9 | 34.69 |
| TraesCS2B01G601300.1 | Wheat | cytosol | 36.45 | 34.66 |
| TraesCSU01G036400.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 36.45 | 34.66 |
| TraesCS2D01G594700.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 36.21 | 34.43 |
| HORVU2Hr1G123050.1 | Barley | cytosol | 26.35 | 31.85 |
| TraesCS6B01G209000.1 | Wheat | cytosol | 32.27 | 30.97 |
| TraesCS6A01G176800.1 | Wheat | cytosol | 32.76 | 30.79 |
| HORVU6Hr1G034250.1 | Barley | cytosol, nucleus, peroxisome | 32.51 | 30.48 |
| TraesCS6D01G167300.1 | Wheat | cytosol | 32.51 | 30.48 |
| CDX99233 | Canola | cytosol, peroxisome, plastid | 31.53 | 30.4 |
| CDX95458 | Canola | cytosol | 31.03 | 30.22 |
| CDX92328 | Canola | cytosol | 31.28 | 30.02 |
| CDY50158 | Canola | cytosol | 30.79 | 29.98 |
| GSMUA_Achr9P29630_001 | Banana | cytosol | 45.07 | 29.61 |
| CDY16513 | Canola | cytosol | 30.79 | 29.55 |
| CDY59286 | Canola | cytosol | 30.79 | 29.55 |
| KXG23010 | Sorghum | cytosol | 33.0 | 29.52 |
| Os12t0161100-00 | Rice | cytosol | 31.77 | 29.39 |
| CDY27655 | Canola | mitochondrion | 30.3 | 28.08 |
| CDY50319 | Canola | cytosol | 29.31 | 27.87 |
| CDY16432 | Canola | cytosol | 29.31 | 27.8 |
| CDX99694 | Canola | mitochondrion | 29.8 | 27.63 |
| CDX74232 | Canola | cytosol, extracellular, mitochondrion, plastid | 23.89 | 26.36 |
| CDX92262 | Canola | cytosol | 26.6 | 26.15 |
| CDX92016 | Canola | mitochondrion | 23.65 | 26.09 |
| CDX99325 | Canola | cytosol | 26.11 | 25.06 |
| CDY08864 | Canola | cytosol | 24.88 | 24.11 |
| CDX84538 | Canola | cytosol | 24.63 | 23.87 |
| CDX75980 | Canola | cytosol | 24.63 | 23.58 |
| CDX82332 | Canola | cytosol | 24.63 | 23.58 |
| CDY71041 | Canola | cytosol | 23.89 | 23.49 |
| CDY51529 | Canola | mitochondrion | 21.67 | 23.47 |
| CDY28714 | Canola | mitochondrion | 21.43 | 23.2 |
| CDX83098 | Canola | cytosol | 23.89 | 21.9 |
| CDY69247 | Canola | cytosol | 23.89 | 21.9 |
| CDY53333 | Canola | cytosol | 23.89 | 21.7 |
| CDY18670 | Canola | cytosol | 23.65 | 21.67 |
| Zm00001d023480_P001 | Maize | cytosol | 29.8 | 21.65 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | GO:A0A078DA09 | InterPro:ARM-like | InterPro:ARM-type_fold |
| EnsemblPlants:CDX84168 | ProteinID:CDX84168 | ProteinID:CDX84168.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 |
| GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 |
| GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00141204001 | InterPro:IPR003613 | InterPro:IPR011989 | InterPro:IPR013083 |
| PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF65 | SMART:SM00504 | SUPFAM:SSF48371 |
| SUPFAM:SSF57850 | UniPathway:UPA00143 | UniParc:UPI0004EF0CB8 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
BnaC04g09300D
Coordinates
chrLK031836:-:423050..424270
Molecular Weight (calculated)
45166.4 Da
IEP (calculated)
8.487
GRAVY (calculated)
-0.008
Length
406 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEEIEIPPF FICPISLEIM KDPVIVSTGI TYDRDSIEKW LFSAKKNSCP VTKQDITDAD LTPNHTLRRL IQSWCTLNAS HGVERIPTPR PPISKSEIEK
101: LLKDSASSHQ NLAKCLKRLR HIVSENASNK RCLEAAGVPE FLATVVSNKD SSMILTDEAL SLLYHLDTSE TGLKNLLNSK KGNDIVNSLM KIMQRGIYES
201: RAYATFLLKN ILEVADPMQI MTLKPAVFTE VVQILDDRIS HKATKSALHI LVNVCPWGRN RHKAVEAGVI SMIIELLMDE SFSSDRRGPE MAMVVLDLLC
301: QCAEGRAEFL NHGAAIAVVC KKILRVSQTA SDRAVRVLFS VGRFCATPAL LNEMLQLGVV AKLCLVLQVS CGSKTKDKAK ELLKLHARAW KESPCLTRNM
401: ILAYPS
101: LLKDSASSHQ NLAKCLKRLR HIVSENASNK RCLEAAGVPE FLATVVSNKD SSMILTDEAL SLLYHLDTSE TGLKNLLNSK KGNDIVNSLM KIMQRGIYES
201: RAYATFLLKN ILEVADPMQI MTLKPAVFTE VVQILDDRIS HKATKSALHI LVNVCPWGRN RHKAVEAGVI SMIIELLMDE SFSSDRRGPE MAMVVLDLLC
301: QCAEGRAEFL NHGAAIAVVC KKILRVSQTA SDRAVRVLFS VGRFCATPAL LNEMLQLGVV AKLCLVLQVS CGSKTKDKAK ELLKLHARAW KESPCLTRNM
401: ILAYPS
001: MGLSLRVRRR GGSVSKKEII PVTSCSEEVE ITIPSQFQCP ISYELMKDPV IIASGITYDR ENIEKWFESG YQTCPVTNTV LTSLEQIPNH TIRRMIQGWC
101: GSSLGGGIER IPTPRVPVTS HQVSEICERL SAATRRGDYA ACMEMVTKMT RLGKESERNR KCVKENGAGL VLCVCFDAFS ENANASLLLE ETVSVLTWML
201: PIGLEGQSKL TTTSSFNRLV ELLRNGDQNA AFLIKELLEL NVTHVHALTK INGVQEAFMK SINRDSTCVN SLISIHHMIL TNQETVSRFL ELDLVNITVE
301: MLVDSENSVC EKALTVLNVI CETKEGREKV RRNKLVIPIL VKKILKISEK KDLVSVMWKV CKSGDGSEVE EALRLGAFKK LVVMLQVGCG EGTKEKVTEL
401: LKMMNKVMKM NGFVDRSYSS SIEFKHVKKP F
101: GSSLGGGIER IPTPRVPVTS HQVSEICERL SAATRRGDYA ACMEMVTKMT RLGKESERNR KCVKENGAGL VLCVCFDAFS ENANASLLLE ETVSVLTWML
201: PIGLEGQSKL TTTSSFNRLV ELLRNGDQNA AFLIKELLEL NVTHVHALTK INGVQEAFMK SINRDSTCVN SLISIHHMIL TNQETVSRFL ELDLVNITVE
301: MLVDSENSVC EKALTVLNVI CETKEGREKV RRNKLVIPIL VKKILKISEK KDLVSVMWKV CKSGDGSEVE EALRLGAFKK LVVMLQVGCG EGTKEKVTEL
401: LKMMNKVMKM NGFVDRSYSS SIEFKHVKKP F
Arabidopsis Description
PUB20U-box domain-containing protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8D1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.