CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037833.1-P	Field mustard	cytosol	99.77	99.77
CDY69247	Canola	cytosol	97.74	97.74
AT5G65920.1	Thale cress	cytosol	83.97	83.78
CDX83098	Canola	cytosol	77.2	77.2
CDY53333	Canola	cytosol	77.2	76.51
VIT_00s0471g00010.t01	Wine grape	cytosol	70.65	70.02
Zm00001d019807_P001	Maize	extracellular	14.0	65.96
KRH77156	Soybean	cytosol	66.82	65.92
GSMUA_Achr8P04940_001	Banana	cytosol	63.88	65.51
KRH58142	Soybean	cytosol	65.24	65.09
GSMUA_Achr2P08620_001	Banana	cytosol	63.21	64.52
GSMUA_Achr3P25750_001	Banana	cytosol	61.17	63.17
EER95229	Sorghum	cytosol	59.82	57.73
KRH28330	Soybean	plastid	66.82	57.59
Zm00001d028294_P001	Maize	cytosol	59.59	57.52
GSMUA_Achr4P07400_001	Banana	cytosol	55.98	57.14
Os03t0232600-01	Rice	cytosol	58.92	56.86
Zm00001d048008_P001	Maize	cytosol	59.37	56.8
HORVU4Hr1G066070.1	Barley	cytosol	58.24	56.09
TraesCS4D01G237600.1	Wheat	cytosol	58.01	55.99
TraesCS4B01G236200.1	Wheat	cytosol	58.01	55.99
TraesCS4A01G060800.1	Wheat	cytosol	57.79	55.77
Zm00001d000044_P001	Maize	cytosol	21.44	41.13
CDY50158	Canola	cytosol	25.06	26.62
CDX95458	Canola	cytosol	24.61	26.14
CDX99233	Canola	cytosol, peroxisome, plastid	24.61	25.89
CDX92328	Canola	cytosol	24.61	25.77
CDX84538	Canola	cytosol	24.15	25.54
CDY08864	Canola	cytosol	24.15	25.54
CDX78096	Canola	cytosol	22.12	25.19
CDY59286	Canola	cytosol	23.48	24.59
CDY59599	Canola	cytosol	22.57	24.45
CDX95337	Canola	cytosol	22.57	24.45
CDY16513	Canola	cytosol	23.25	24.35
CDY23218	Canola	cytosol	21.67	24.24
CDX75980	Canola	cytosol	23.02	24.06
CDY71041	Canola	cytosol	22.35	23.97
CDX84587	Canola	cytosol	22.12	23.96
CDX82332	Canola	cytosol	22.8	23.82
CDY32070	Canola	cytosol	22.12	23.79
CDY40422	Canola	cytosol	22.12	23.79
CDY50319	Canola	cytosol	22.8	23.65
CDX84168	Canola	cytosol	21.67	23.65
CDX92262	Canola	cytosol	21.9	23.49
CDY16432	Canola	cytosol	22.57	23.36
CDX79645	Canola	cytosol	21.44	23.28
CDX99325	Canola	cytosol	22.12	23.17
CDX75084	Canola	cytosol	21.22	23.15
CDY53920	Canola	cytosol	20.77	21.1
CDY27655	Canola	mitochondrion	20.77	21.0
CDY01063	Canola	cytosol	20.77	20.91
CDX99694	Canola	mitochondrion	20.54	20.78
CDY51529	Canola	mitochondrion	17.38	20.53
CDY28714	Canola	mitochondrion	17.38	20.53
CDX92016	Canola	mitochondrion	16.93	20.38
CDX74232	Canola	cytosol, extracellular, mitochondrion, plastid	16.93	20.38
CDY08490	Canola	cytosol	20.32	20.36
CDX73849	Canola	cytosol	20.99	19.91
CDY67531	Canola	cytosol	20.09	19.91
CDY47911	Canola	cytosol	18.96	19.91

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078FW77	UniProt:A0A078FW77	InterPro:ARM-like
InterPro:ARM-type_fold	EnsemblPlants:CDY18670	ProteinID:CDY18670	ProteinID:CDY18670.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00005742001	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF105	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniPathway:UPA00143	UniParc:UPI0004EE7F46	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

BnaA09g07250DRING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A078FW77]

Coordinates

chrLK032087:+:395374..396705

Molecular Weight (calculated)

48201.2 Da

IEP (calculated)

7.445

GRAVY (calculated)

0.140

Length

443 amino acids

Sequence
(BLAST)

001: MPMFQPFKGG GFDGHVIDLH TAVKDGVLGG GDGGDGKTAA AENELDLKTM ITNLELQETP SVFICPISLD PMQDPVTLCT GQTYERSNIL KWLSLGHRTC
101: PTTMQELWDD AVTPNKTLHQ LIHAWFSQKY VMMKKRSEDV QGRVIEIVGA LRKAKGKEKV HALSELKGVV MAHEIAKKSV VEEGGVFVIS SLLTPFTSHA
201: VGSEAVAILV NLELDAVSKA GLMQPARVSL MVDMLNDGSI ETKINCARLI GRLVEERGFR AELVSSHSLL VGLMRLVKDR RRRNGVSPAL ALLKSITVHK
301: QVRSLMVSVE AVPQLVDVLP CLGPECLESA LYVLDSLCSD NEGVTALKES VNTIPNTVRL LMRVSETCTA YAVSILWSVC RLASRECSSL AVELGLAAKL
401: LLVIQSGCDP ALKQRSAELL KLCSLHYSDT MFISKCKLAP TIQ

Best Arabidopsis Sequence Match ( AT5G65920.2 )
(BLAST)

001: MPMFQPSKNG GFDGHILDLH SAVKDGVLGG GDGKFLVVVT DEKKKLDLKE MISELELPEI PSVFICPISL EPMQDPVTLC TGQTYERSNI LKWFNIGHCT
101: CPTTMQELWD DLVTPNKTLH QLIYTWFSQK YVLMKKRSED VQGRAIEILG TLRKAKGKAK VHALSELKQV VMAHAIAKKT VVDEGGVFVI SSLLSPFTSH
201: AVGSEAIAIL VNLELDSDSK AGLMQPARVS LMVDMLNDGS IETKINCARL IGRLVEEKGF RAELVSSHSL LVGLMRLVKD RRRRNGVSPA LTLLKSVSVH
301: KQVRNLLVRI GAVPQLVDVL PCLDVECLES ALFVLDSLCL ESEGRIALKD SVNTIPHTVR LLMKVSEKCT NYAISILWSV CKLASEECSS LAVEVGLAAK
401: LLLVIQSGCD PALKQRSAEL LKLCSLHYSD SMFISKCKLT RTIQ

Arabidopsis Description

PUB31U-box domain-containing protein 31 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHN9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.