Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX92262 | Canola | cytosol | 91.25 | 93.46 |
| CDY71041 | Canola | cytosol | 76.83 | 78.69 |
| AT3G18710.1 | Thale cress | cytosol | 76.83 | 78.31 |
| CDX82332 | Canola | cytosol | 78.01 | 77.83 |
| CDX75980 | Canola | cytosol | 77.07 | 76.89 |
| CDY08864 | Canola | cytosol | 53.19 | 53.7 |
| CDX84538 | Canola | cytosol | 52.96 | 53.46 |
| VIT_04s0044g00870.t01 | Wine grape | cytosol | 48.94 | 50.24 |
| KRH43397 | Soybean | cytosol | 47.75 | 48.33 |
| KRH59546 | Soybean | cytosol | 47.04 | 47.61 |
| KRH53869 | Soybean | cytosol | 45.86 | 46.52 |
| GSMUA_Achr8P30420_001 | Banana | mitochondrion | 29.55 | 45.79 |
| PGSC0003DMT400065698 | Potato | cytosol | 41.84 | 42.14 |
| Solyc11g005700.1.1 | Tomato | cytosol | 41.61 | 41.9 |
| KRH36899 | Soybean | cytosol | 35.46 | 40.43 |
| GSMUA_Achr10P... | Banana | plastid | 32.15 | 35.42 |
| GSMUA_Achr6P18140_001 | Banana | cytosol | 33.57 | 34.72 |
| GSMUA_Achr5P01020_001 | Banana | cytosol | 32.39 | 34.16 |
| Zm00001d016719_P001 | Maize | cytosol | 32.86 | 32.4 |
| TraesCS2D01G296700.1 | Wheat | cytosol, mitochondrion, plastid | 33.33 | 31.97 |
| TraesCS2A01G298600.1 | Wheat | cytosol, mitochondrion, plastid | 33.33 | 31.97 |
| TraesCS2B01G315100.1 | Wheat | cytosol | 33.1 | 31.75 |
| EES05205 | Sorghum | cytosol | 33.33 | 31.13 |
| Zm00001d025379_P001 | Maize | cytosol, mitochondrion, peroxisome, plastid | 32.62 | 31.08 |
| Zm00001d050689_P001 | Maize | cytosol | 31.44 | 31.0 |
| OQU81548 | Sorghum | mitochondrion | 32.62 | 30.87 |
| Os04t0418500-01 | Rice | plastid | 32.86 | 30.82 |
| Os02t0540700-00 | Rice | plastid | 33.33 | 27.92 |
| HORVU2Hr1G074130.1 | Barley | plastid | 33.1 | 27.03 |
| CDX78096 | Canola | cytosol | 24.82 | 26.99 |
| Os05t0439400-01 | Rice | plasma membrane | 28.37 | 26.55 |
| KXG22102 | Sorghum | mitochondrion | 28.61 | 26.48 |
| CDX75084 | Canola | cytosol | 25.3 | 26.35 |
| CDY59599 | Canola | cytosol | 25.3 | 26.16 |
| CDX84587 | Canola | cytosol | 25.3 | 26.16 |
| CDX84168 | Canola | cytosol | 25.06 | 26.11 |
| CDY32070 | Canola | cytosol | 25.3 | 25.97 |
| CDY40422 | Canola | cytosol | 25.3 | 25.97 |
| Zm00001d038280_P001 | Maize | cytosol | 27.66 | 25.89 |
| CDX79645 | Canola | cytosol | 24.82 | 25.74 |
| CDX95337 | Canola | cytosol | 24.59 | 25.43 |
| TraesCS1B01G284200.1 | Wheat | mitochondrion | 26.95 | 25.17 |
| CDY23218 | Canola | cytosol | 23.4 | 25.0 |
| TraesCS1D01G274600.1 | Wheat | mitochondrion | 26.71 | 24.94 |
| TraesCS1A01G274800.1 | Wheat | mitochondrion | 26.48 | 24.72 |
| HORVU1Hr1G074180.1 | Barley | mitochondrion, plastid | 26.24 | 24.5 |
| CDX95458 | Canola | cytosol | 24.11 | 24.46 |
| CDY50158 | Canola | cytosol | 24.11 | 24.46 |
| CDX92328 | Canola | cytosol | 24.35 | 24.35 |
| CDY27655 | Canola | mitochondrion | 25.06 | 24.2 |
| CDX99233 | Canola | cytosol, peroxisome, plastid | 23.88 | 23.99 |
| CDX99694 | Canola | mitochondrion | 24.59 | 23.74 |
| CDX83098 | Canola | cytosol | 23.64 | 22.57 |
| CDY51529 | Canola | mitochondrion | 19.86 | 22.4 |
| CDY53333 | Canola | cytosol | 23.64 | 22.37 |
| CDY59286 | Canola | cytosol | 22.22 | 22.22 |
| CDY16513 | Canola | cytosol | 22.22 | 22.22 |
| CDY18670 | Canola | cytosol | 23.17 | 22.12 |
| CDY53920 | Canola | cytosol | 22.7 | 22.02 |
| CDY69247 | Canola | cytosol | 22.93 | 21.9 |
| CDY47911 | Canola | cytosol | 21.75 | 21.8 |
| CDY50319 | Canola | cytosol | 21.99 | 21.78 |
| CDX92016 | Canola | mitochondrion | 18.91 | 21.74 |
| CDY16432 | Canola | cytosol | 21.99 | 21.73 |
| CDY28714 | Canola | mitochondrion | 19.15 | 21.6 |
| CDY67531 | Canola | cytosol | 22.7 | 21.48 |
| CDX74232 | Canola | cytosol, extracellular, mitochondrion, plastid | 18.68 | 21.47 |
| CDX73849 | Canola | cytosol | 22.93 | 20.77 |
| CDY01063 | Canola | cytosol | 21.28 | 20.45 |
| CDY08490 | Canola | cytosol | 21.28 | 20.36 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:19.2.2.1.5.2.1 | Gene3D:3.30.40.10 | GO:A0A078EB49 | InterPro:ARM-like | InterPro:ARM-type_fold |
| EnsemblPlants:CDX99325 | ProteinID:CDX99325 | ProteinID:CDX99325.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 |
| GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 |
| GO:GO:0016740 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00107616001 | InterPro:IPR003613 | InterPro:IPR011989 | InterPro:IPR013083 |
| PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF20 | SMART:SM00504 | SUPFAM:SSF48371 |
| SUPFAM:SSF57850 | UniPathway:UPA00143 | UniParc:UPI0004EF052C | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD | SEG:seg |
Description
BnaC05g34400D
Coordinates
chrLK031909:+:1148865..1150428
Molecular Weight (calculated)
46583.2 Da
IEP (calculated)
8.622
GRAVY (calculated)
0.001
Length
423 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRDETETYI TVPTFFKCPI SLDVMRSPVS LCTGVTYDRP SIQRWLDGGN NTCPATMQIL KSKDFVPNLT LQRLIKAWSD SVGSSAAGSP DPASARGIPT
101: KEEVNESLMR LSQAKDDEIR LEILSRIVRF VKDSEASREF LSGREDLVPM LVDIVSAVKT AKIKLAFIAI KILDTIIKKG NEGDRERLSK LMLLTNGADC
201: LTAILLAIQR GDLESKIEAV SVLEVISSYD AKSKMMIAER EGILTELIKS ISTESDPNLM ETSLSFMITI SKSKRVRSKL IAAKTITKIK DILMTEETIS
301: VAVTEKSLKL LEILSSKREG RSEICGGGCV EGVVKKLLKV STTATEHAVT ILWCLCHVFK EDKTVEETVE RSNGVTKLLV VIQSNCSPMV RQMAKDLIKV
401: LKVKSSASAL AAYETKTTHI MPF
101: KEEVNESLMR LSQAKDDEIR LEILSRIVRF VKDSEASREF LSGREDLVPM LVDIVSAVKT AKIKLAFIAI KILDTIIKKG NEGDRERLSK LMLLTNGADC
201: LTAILLAIQR GDLESKIEAV SVLEVISSYD AKSKMMIAER EGILTELIKS ISTESDPNLM ETSLSFMITI SKSKRVRSKL IAAKTITKIK DILMTEETIS
301: VAVTEKSLKL LEILSSKREG RSEICGGGCV EGVVKKLLKV STTATEHAVT ILWCLCHVFK EDKTVEETVE RSNGVTKLLV VIQSNCSPMV RQMAKDLIKV
401: LKVKSSASAL AAYETKTTHI MPF
001: MGRDETETYI TVPSFFKCPI SLDVMRSPVS LCTGVTYDRA SIQRWLDGGN NTCPATMQLL KTKDFVPNLT LQRLINIWSD SIGRRHNGDS PVLNPPSGRE
101: VPTKEEVNVL LERLMSLENL MKIVRFVKDS DSNREFLSKK MEFVPMLVDI IRTKKTKIEL VIMAIRILDS IKVDRERLSN LMLANDGGDC LTAILLAIQR
201: GNLESKIESV RVLDWISFDA KSKLMIAERD GVLTEMMKSI SITESSDPSL IEASLSFLIT ISKSKRVRSK LIAAKAITKI KDILLTETLT NVAVTEKSLK
301: LLETLSSKRE GRLEICGDDN GRCVEGVVKK LLKVSTTATE HAVTILWCLC YVFREDKTVE ETVERSNGVT KLLVVIQSNC SAMVRQMAKD LIKVLKFNSS
401: ALAAYETKTT HIMPF
101: VPTKEEVNVL LERLMSLENL MKIVRFVKDS DSNREFLSKK MEFVPMLVDI IRTKKTKIEL VIMAIRILDS IKVDRERLSN LMLANDGGDC LTAILLAIQR
201: GNLESKIESV RVLDWISFDA KSKLMIAERD GVLTEMMKSI SITESSDPSL IEASLSFLIT ISKSKRVRSK LIAAKAITKI KDILLTETLT NVAVTEKSLK
301: LLETLSSKRE GRLEICGDDN GRCVEGVVKK LLKVSTTATE HAVTILWCLC YVFREDKTVE ETVERSNGVT KLLVVIQSNC SAMVRQMAKD LIKVLKFNSS
401: ALAAYETKTT HIMPF
Arabidopsis Description
PUB29RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:A0A178VJJ8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.