Factsheet for Os02t0540700-00

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0761200-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G09800.1	Os02t0761200-01	AT4G33945.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050689_P001	Maize	cytosol	71.09	83.68
Zm00001d016719_P001	Maize	cytosol	71.09	83.68
EES05205	Sorghum	cytosol	72.28	80.57
GSMUA_Achr8P30420_001	Banana	mitochondrion	38.81	71.79
Os04t0418500-01	Rice	plastid	63.17	70.73
GSMUA_Achr6P18140_001	Banana	cytosol	44.55	55.01
GSMUA_Achr10P...	Banana	plastid	41.19	54.17
VIT_04s0044g00870.t01	Wine grape	cytosol	33.27	40.78
KRH53869	Soybean	cytosol	32.67	39.57
KRH43397	Soybean	cytosol	31.88	38.52
VIT_18s0166g00190.t01	Wine grape	plasma membrane	30.3	38.25
KRH59546	Soybean	cytosol	31.29	37.8
PGSC0003DMT400002079	Potato	cytosol	31.29	37.8
Os05t0439400-01	Rice	plasma membrane	32.87	36.73
Solyc04g071030.1.1	Tomato	cytosol	30.69	36.3
CDX84538	Canola	cytosol	29.9	36.04
CDY08864	Canola	cytosol	29.7	35.8
Bra024318.1-P	Field mustard	cytosol	29.7	35.8
Solyc11g005700.1.1	Tomato	cytosol	29.7	35.71
AT5G09800.1	Thale cress	cytosol	28.71	35.45
AT5G64660.1	Thale cress	cytosol	29.31	35.24
CDX92262	Canola	cytosol	28.71	35.11
KRH08734	Soybean	mitochondrion	28.32	34.54
PGSC0003DMT400065698	Potato	cytosol	28.71	34.52
CDX75980	Canola	cytosol	28.91	34.43
KRH70331	Soybean	mitochondrion	27.72	34.4
KRH36899	Soybean	cytosol	25.15	34.23
Bra022347.1-P	Field mustard	cytosol	28.51	33.96
CDX82332	Canola	cytosol	28.12	33.49
CDX99325	Canola	cytosol	27.92	33.33
Bra001717.1-P	Field mustard	cytosol	27.72	33.02
AT3G18710.1	Thale cress	cytosol	27.13	33.01
Bra037568.1-P	Field mustard	cytosol	26.93	32.93
CDY71041	Canola	cytosol	26.73	32.69
Os01t0865700-00	Rice	plastid	24.36	30.22
Os03t0232600-01	Rice	cytosol	26.73	29.41
Os02t0548700-00	Rice	cytosol, extracellular, plastid	24.16	29.26
Os06t0248500-00	Rice	mitochondrion	25.94	28.92
Os04t0437300-01	Rice	cytosol	24.36	28.87
Os04t0686000-01	Rice	cytosol	22.77	27.84
Os02t0539200-01	Rice	cytosol	22.97	26.24
Os03t0240600-01	Rice	plastid	22.97	26.07
Os02t0738200-01	Rice	mitochondrion	23.17	25.66
Os04t0589700-01	Rice	cytosol	21.19	25.42
Os02t0690600-01	Rice	cytosol	20.59	24.47
Os12t0161100-00	Rice	cytosol	19.6	22.55

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	ProteinID:BAD28063.1
ProteinID:BAF08976.1	ProteinID:BAS79097.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	EnsemblPlantsGene:Os02g0540700	EnsemblPlants:Os02t0540700-00
PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF12	UniProt:Q6ETF7	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI00003CE5D6	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

plant U-box-containing protein 45, U-box protein 45Similar to Arm repeat-containing protein. (Os02t0540700-00)

Coordinates

chr2:+:20082159..20083676

Molecular Weight (calculated)

52085.6 Da

IEP (calculated)

7.574

GRAVY (calculated)

0.128

Length

505 amino acids

Sequence
(BLAST)

001: MDPSSSSSSS SPFSTPFHSI SSTSTLRPQL AIAIVATPSV CGRNEIEQQP SMVRKEMGGG GGRLAAEYQG LEVKVPTFFR CPISLDVMRS PVSLCTGVTY
101: DRASIQRWID SGNTTCPATM LPLPSTDLVP NLTLRRLIAL WASTAAPSSP AAPSAVGPTP AAAAAELLRR VAAPGVDPCP ALRKLAAFLS DDDVDEFDKN
201: ALARAGGAAE TVASVLRRRG KGDDDDGGVE AVEAAVRVLA VLATSDCIEE ENRRRVAAAL AAGGAAPSVA ASLARVMRSG SGLEARVDAA RLVESLLRDG
301: ARGATAPGVR AAVAESEELV AELIRLVGPT DEKGSLDAQA VDAGLSCLAA IVAATRRARA EMVRLGAVPA AVRVLATDHH GGSHAQALRV LEAAVGCAEG
401: RAAVCEVAEA AIPAVVSRMM RCGGMGGAEA AVSVLWAVCH RYRDRRAVEA AAASEGGLTK LLLLMQSGCS PAARQMASEL LKMFKVNAKS CLAGYDSKTT
501: HIMPF

Best Arabidopsis Sequence Match ( AT5G64660.1 )
(BLAST)

001: MRKDDLCITV PTFFRCPISL DVMKSPVSLC TGVTYDRASI QRWLDGGNNT CPATMQILQN KDFIPNRTLQ RLIEIWSDSV RRRTCVESAE LAAPTRDEIA
101: DAIDRVKIEK EERDDREVLS KIVRFGRESD DNRGFLAGKD DFVKLLVDLI NQVDFETTSA AKSLVVQEAV KILSTIRSKV SDRRRFSNLI LTNGRDRLSV
201: IVYLFKTGNV ELKIDCAGLL EFIAVDAESK LLIAERDGLI TELMKSISKD SDLSLIESSL SCLIAISSPK RVKLNLLREK LIGDVTKLLS DSTSSLSVSV
301: TEKCLKLLEI LASTKEGRSE ICGGDGECLK TVVKKLMKVS TAATEHAVTV LWSVSYLFKE DKALEAVTSV NGVTKILLLL QSNCSPAVRR MLTDLLKVFK
401: VNSRSCLSAY DTKTTHIMPF

Arabidopsis Description

PUB27U-box domain-containing protein 27 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLF4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.