Factsheet for Os03t0240600-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

plastid: 22201023

gfp PMID: 22201023 doi

YJ Hur, YB Yi, JH Lee, YS Chung, HW Jung, DJ Yun, KM Kim, DS Park, DH Kim

College of Life Science and Natural Resources, Dong-A University, Busan, 604-714, Korea.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G229900.1	Wheat	mitochondrion	79.33	80.23
TraesCS4B01G228700.1	Wheat	mitochondrion	78.88	79.77
EER92576	Sorghum	mitochondrion	81.12	79.52
HORVU4Hr1G064070.1	Barley	mitochondrion	77.75	78.64
Zm00001d028374_P001	Maize	mitochondrion	78.88	78.52
GSMUA_Achr6P11310_001	Banana	cytosol	45.62	53.42
GSMUA_Achr11P...	Banana	mitochondrion	49.66	52.0
Os06t0248500-00	Rice	mitochondrion	51.46	50.55
GSMUA_Achr10P...	Banana	cytosol	42.47	50.27
GSMUA_Achr7P18640_001	Banana	mitochondrion	42.47	49.87
GSMUA_Achr6P02470_001	Banana	mitochondrion	42.02	49.21
VIT_01s0011g06140.t01	Wine grape	mitochondrion	48.09	48.42
Os02t0738200-01	Rice	mitochondrion	48.54	47.37
KRH48691	Soybean	cytosol	43.15	43.94
KRH39018	Soybean	mitochondrion	42.02	42.69
PGSC0003DMT400058621	Potato	cytosol, mitochondrion	43.15	42.57
GSMUA_Achr3P02030_001	Banana	plastid	40.0	42.48
Solyc01g005160.2.1	Tomato	mitochondrion	42.47	42.0
KRH17309	Soybean	cytosol, mitochondrion	41.35	41.91
KRH72959	Soybean	cytosol, mitochondrion	40.9	41.55
KRG97963	Soybean	mitochondrion	40.22	41.53
KRH30918	Soybean	mitochondrion	40.45	41.38
Solyc04g008100.1.1	Tomato	cytosol	40.67	40.95
PGSC0003DMT400073836	Potato	cytosol	37.98	40.33
PGSC0003DMT400075778	Potato	mitochondrion	39.55	39.82
Solyc11g006030.1.1	Tomato	cytosol	38.2	39.53
Bra039752.1-P	Field mustard	cytosol	36.4	38.39
CDY50319	Canola	cytosol	36.63	38.17
CDY16432	Canola	cytosol	36.63	38.08
AT1G66160.1	Thale cress	cytosol	34.16	35.27
AT5G37490.1	Thale cress	cytosol, nucleus, peroxisome	34.38	35.17
Bra025442.1-P	Field mustard	mitochondrion	33.93	34.47
CDY27655	Canola	mitochondrion	33.48	34.02
CDX99694	Canola	mitochondrion	33.26	33.79
Os02t0548700-00	Rice	cytosol, extracellular, plastid	29.44	31.41
AT3G02840.1	Thale cress	mitochondrion	26.52	31.13
Os01t0865700-00	Rice	plastid	28.31	30.96
CDX92016	Canola	mitochondrion	25.39	30.71
CDX74232	Canola	cytosol, extracellular, mitochondrion, plastid	25.39	30.71
Bra040605.1-P	Field mustard	mitochondrion	25.62	30.4
CDY51529	Canola	mitochondrion	25.39	30.13
CDY28714	Canola	mitochondrion	25.39	30.13
Bra001067.1-P	Field mustard	mitochondrion	24.72	29.89
Os04t0686000-01	Rice	cytosol	27.42	29.54
Os02t0539200-01	Rice	cytosol	27.64	27.83
Os04t0589700-01	Rice	cytosol	24.49	25.89
Os04t0437300-01	Rice	cytosol	24.72	25.82
Os02t0690600-01	Rice	cytosol	23.82	24.94
Os04t0418500-01	Rice	plastid	25.17	24.83
Os02t0540700-00	Rice	plastid	26.07	22.97
Os03t0232600-01	Rice	cytosol	23.6	22.88
Os05t0439400-01	Rice	plasma membrane	23.15	22.79
Os12t0161100-00	Rice	cytosol	22.47	22.78

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:4332204	ProteinID:ABF94888.1	EMBL:AK109161
InterPro:ARM-like	InterPro:ARM-type_fold	ProteinID:BAF11423.1	ProteinID:BAS83188.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0016874	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	EMBL:JN162673	EnsemblPlantsGene:Os03g0240600	EnsemblPlants:Os03t0240600-01	PFAM:PF04564	PFscan:PS51698
PANTHER:PTHR22849	PANTHER:PTHR22849:SF107	UniProt:Q10PB1	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI0000DB4174	InterPro:Ubox_domain	RefSeq:XP_015629195.1	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

U-box containing E3 ligase induced by phosphate starvationU-box containing E3 ligase, Response to phosphate starvation (Os03t0240600-01)

Coordinates

chr3:-:7440402..7442007

Molecular Weight (calculated)

46831.2 Da

IEP (calculated)

8.717

GRAVY (calculated)

0.201

Length

445 amino acids

Sequence
(BLAST)

001: MALLARRARK AVMAKAPAPL LQKRGGGAAA ELAIPAHFRC PISLDLMRDP VTAPTGITYD REGIEAWLDT GRAVCPVTHA PLRHEDLVPN HAIRRVIQDW
101: CVANRSRGVE RIPTPKIPVT PVQASELLFD VAESAARRGA AGRAAGAVAR VRALARDSER NRRCFVSVGT GRVLAAAFES LAAAGEAGVL EDVLAALVCM
201: MPLDEEAARV LASSSSMGSL VAIAKHGSLA GRLNAVLAIK EAVSRDGAFV DLADDKVDKV VDALVVIIKA PICPQATKAA MVATYHLASS DERVAARVAS
301: TGLVPTLIEA LVDADKSVSE KALAVLDAML ASEEGRASAR GHALAMPALV KKMFRVSDVA TELAVSAMWR LGCKASSGDE EAAATGCLVE ALRVGAFQKL
401: LLLLQVGCRD ATKEKATELL KMLNKHKGLG ECVDAVDFRG LNRLS

Best Arabidopsis Sequence Match ( AT5G37490.1 )
(BLAST)

001: MGFLWRTRSN EKKITPVLSW PESEPESEIT IPPEFQCPIS IDLMKDPVII STGITYDRVS IETWINSGNK TCPVTNTVLT TFDQIPNHTI RKMIQGWCVE
101: KGSPLIQRIP TPRVPLMPCE VYEISRKLSS ATRRGDYEKC GVIIEKIKKL GDESEKNRKC VNENSVGWVL CDCFDKFSGD EKLTFMLNEI LSLLTWMFPI
201: GLEGISKLAS ATSFRCVAGL LKSTDDSVRQ NAAFIMKEIL SLDETRVHSF AVENGVAEAL VKLIRDSVSS SSTKSSLIAI YQMVLQKPEI ASEFLEIGLV
301: SITVEMIVDA ENSVCEKALA VLDAICETEH GREEVRKNAL VMPLLVKKIA KVSELATRSS MSMILKLWKT GNTVAVEDAV RLGAFQKVLL VLQVGYGEET
401: KEKATELLKM MNTQMKLMSD CVDSLKEFKY IKKPF

Arabidopsis Description

PUB21U-box domain-containing protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q5PNY6]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.