Factsheet for AT5G37490.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX99694	Canola	mitochondrion	78.62	78.08
CDY27655	Canola	mitochondrion	78.16	77.63
Bra025442.1-P	Field mustard	mitochondrion	78.16	77.63
AT1G66160.1	Thale cress	cytosol	57.01	57.54
PGSC0003DMT400073836	Potato	cytosol	44.37	46.06
Solyc11g006030.1.1	Tomato	cytosol	45.52	46.05
KRG97963	Soybean	mitochondrion	45.52	45.94
KRH30918	Soybean	mitochondrion	45.75	45.75
KRH72959	Soybean	cytosol, mitochondrion	44.14	43.84
KRH17309	Soybean	cytosol, mitochondrion	43.91	43.51
GSMUA_Achr11P...	Banana	mitochondrion	40.69	41.65
GSMUA_Achr10P...	Banana	cytosol	35.86	41.49
GSMUA_Achr6P11310_001	Banana	cytosol	35.86	41.05
GSMUA_Achr6P02470_001	Banana	mitochondrion	34.48	39.47
AT3G02840.1	Thale cress	mitochondrion	33.79	38.79
GSMUA_Achr7P18640_001	Banana	mitochondrion	33.1	37.99
Zm00001d017976_P001	Maize	mitochondrion	37.93	36.5
Os06t0248500-00	Rice	mitochondrion	37.93	36.42
TraesCS7D01G201600.1	Wheat	mitochondrion	36.78	36.2
TraesCS7B01G105600.1	Wheat	mitochondrion	37.01	36.1
GSMUA_Achr3P02030_001	Banana	plastid	34.25	35.56
Zm00001d044734_P001	Maize	mitochondrion	35.86	35.29
TraesCS4D01G229900.1	Wheat	mitochondrion	35.63	35.23
TraesCS4B01G228700.1	Wheat	mitochondrion	35.63	35.23
EES05563	Sorghum	mitochondrion	37.24	35.06
Zm00001d028374_P001	Maize	mitochondrion	35.86	34.9
HORVU4Hr1G064070.1	Barley	mitochondrion	35.17	34.77
KXG19704	Sorghum	mitochondrion	36.55	34.64
Os03t0240600-01	Rice	plastid	35.17	34.38
EER92576	Sorghum	mitochondrion	35.4	33.92
TraesCS6B01G342800.1	Wheat	mitochondrion	35.4	33.92
TraesCS6A01G312600.1	Wheat	mitochondrion	35.4	33.85
TraesCS6D01G292200.1	Wheat	mitochondrion	34.94	33.48
Zm00001d030251_P001	Maize	cytosol	34.02	33.33
Os02t0738200-01	Rice	mitochondrion	34.48	32.89
HORVU7Hr1G040790.2	Barley	plastid	36.78	32.79
KXG38738	Sorghum	plastid	34.48	30.36
TraesCS5A01G088600.1	Wheat	cytosol	23.68	30.12
HORVU6Hr1G077120.1	Barley	plastid	35.4	30.08
AT1G49780.1	Thale cress	cytoskeleton, cytosol, vacuole	28.28	29.22
AT2G35930.1	Thale cress	cytosol	27.59	29.2
AT3G19380.1	Thale cress	cytosol, golgi, plastid	27.82	28.74
AT3G52450.1	Thale cress	cytosol	27.36	27.36
AT5G09800.1	Thale cress	cytosol	24.14	25.67
AT5G64660.1	Thale cress	cytosol	23.91	24.76
AT3G18710.1	Thale cress	cytosol	22.99	24.1
AT3G49810.1	Thale cress	cytosol	22.99	22.32
AT3G11840.1	Thale cress	cytosol	23.22	22.15
AT5G65920.1	Thale cress	cytosol	22.07	21.62

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:833727	ProteinID:AED94197.1	InterPro:ARM-like
InterPro:ARM-type_fold	ArrayExpress:AT5G37490	EnsemblPlantsGene:AT5G37490	RefSeq:AT5G37490	TAIR:AT5G37490	RefSeq:AT5G37490-TAIR-G
EnsemblPlants:AT5G37490.1	TAIR:AT5G37490.1	Unigene:At.30484	ProteinID:BAB10667.1	EMBL:BT020311	EMBL:BT020439
GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009719	GO:GO:0009987	GO:GO:0010200	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	RefSeq:NP_198565.1	PFAM:PF04564
PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000293	PO:PO:0001054	PO:PO:0004507
PO:PO:0007064	PO:PO:0007095	PO:PO:0007115	PO:PO:0007123	PO:PO:0007616	PO:PO:0008019
PO:PO:0009005	PO:PO:0009009	PO:PO:0009025	PO:PO:0009030	PO:PO:0009031	PO:PO:0009047
PO:PO:0020030	PO:PO:0020100	PO:PO:0025022	PO:PO:0025281	PFscan:PS51698	PANTHER:PTHR22849
PANTHER:PTHR22849:SF61	UniProt:Q5PNY6	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000016276D
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

PUB21U-box domain-containing protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q5PNY6]

Coordinates

chr5:+:14887429..14889151

Molecular Weight (calculated)

48727.6 Da

IEP (calculated)

6.329

GRAVY (calculated)

-0.037

Length

435 amino acids

Sequence
(BLAST)

001: MGFLWRTRSN EKKITPVLSW PESEPESEIT IPPEFQCPIS IDLMKDPVII STGITYDRVS IETWINSGNK TCPVTNTVLT TFDQIPNHTI RKMIQGWCVE
101: KGSPLIQRIP TPRVPLMPCE VYEISRKLSS ATRRGDYEKC GVIIEKIKKL GDESEKNRKC VNENSVGWVL CDCFDKFSGD EKLTFMLNEI LSLLTWMFPI
201: GLEGISKLAS ATSFRCVAGL LKSTDDSVRQ NAAFIMKEIL SLDETRVHSF AVENGVAEAL VKLIRDSVSS SSTKSSLIAI YQMVLQKPEI ASEFLEIGLV
301: SITVEMIVDA ENSVCEKALA VLDAICETEH GREEVRKNAL VMPLLVKKIA KVSELATRSS MSMILKLWKT GNTVAVEDAV RLGAFQKVLL VLQVGYGEET
401: KEKATELLKM MNTQMKLMSD CVDSLKEFKY IKKPF

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.