Subcellular Localization
min:
: max
Winner_takes_all: cytoskeleton, vacuole, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- cytoskeleton 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16513 | Canola | cytosol | 89.31 | 88.89 |
| Bra014206.1-P | Field mustard | cytosol | 89.31 | 88.89 |
| CDY59286 | Canola | cytosol | 88.84 | 88.42 |
| AT3G19380.1 | Thale cress | cytosol, golgi, plastid | 80.76 | 80.76 |
| VIT_03s0063g00180.t01 | Wine grape | cytosol | 66.75 | 67.71 |
| KRH50316 | Soybean | cytosol, plasma membrane, plastid | 66.03 | 67.15 |
| KRH70657 | Soybean | cytosol | 66.03 | 66.99 |
| Solyc01g107980.2.1 | Tomato | cytosol | 65.8 | 66.75 |
| PGSC0003DMT400066588 | Potato | cytosol | 65.8 | 66.75 |
| GSMUA_Achr9P08750_001 | Banana | cytosol, plasma membrane, plastid | 42.99 | 52.46 |
| GSMUA_Achr1P13220_001 | Banana | cytosol | 46.79 | 49.75 |
| EES06938 | Sorghum | extracellular | 47.98 | 49.63 |
| Zm00001d050712_P001 | Maize | extracellular, plastid | 47.74 | 49.14 |
| TraesCS6D01G237900.1 | Wheat | extracellular | 47.27 | 48.89 |
| TraesCS6B01G268300.1 | Wheat | extracellular | 47.27 | 48.89 |
| TraesCS6A01G256700.1 | Wheat | extracellular | 47.03 | 48.65 |
| Zm00001d016764_P001 | Maize | extracellular | 48.22 | 48.56 |
| Os02t0548700-00 | Rice | cytosol, extracellular, plastid | 47.98 | 48.44 |
| GSMUA_Achr6P25670_001 | Banana | cytosol | 48.46 | 47.66 |
| AT2G35930.1 | Thale cress | cytosol | 29.45 | 30.17 |
| AT5G37490.1 | Thale cress | cytosol, nucleus, peroxisome | 29.22 | 28.28 |
| AT3G52450.1 | Thale cress | cytosol | 28.74 | 27.82 |
| AT1G66160.1 | Thale cress | cytosol | 26.13 | 25.52 |
| AT3G49810.1 | Thale cress | cytosol | 26.13 | 24.55 |
| AT5G65920.1 | Thale cress | cytosol | 25.65 | 24.32 |
| AT5G64660.1 | Thale cress | cytosol | 23.99 | 24.05 |
| AT5G09800.1 | Thale cress | cytosol | 23.04 | 23.72 |
| AT3G11840.1 | Thale cress | cytosol | 25.42 | 23.46 |
| AT3G18710.1 | Thale cress | cytosol | 23.04 | 23.37 |
| AT3G02840.1 | Thale cress | mitochondrion | 19.71 | 21.9 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | EntrezGene:841401 | ProteinID:AAG13057.1 | ProteinID:AEE32475.1 |
| EMBL:AK118346 | InterPro:ARM-like | InterPro:ARM-type_fold | ArrayExpress:AT1G49780 | EnsemblPlantsGene:AT1G49780 | RefSeq:AT1G49780 |
| TAIR:AT1G49780 | RefSeq:AT1G49780-TAIR-G | EnsemblPlants:AT1G49780.1 | TAIR:AT1G49780.1 | EMBL:BT029013 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0006464 | GO:GO:0006950 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009814 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | GO:GO:0061630 | InterPro:IPR003613 | InterPro:IPR011989 |
| InterPro:IPR013083 | RefSeq:NP_175400.1 | PFAM:PF04564 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF56 | Symbol:PUB26 | UniProt:Q9FXA4 |
| SMART:SM00504 | SUPFAM:SSF48371 | SUPFAM:SSF57850 | UniParc:UPI00000A20B4 | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD |
| SEG:seg | : | : | : | : | : |
Description
PUB26U-box domain-containing protein 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA4]
Coordinates
chr1:-:18428788..18430497
Molecular Weight (calculated)
45965.9 Da
IEP (calculated)
6.702
GRAVY (calculated)
0.128
Length
421 amino acids
Sequence
(BLAST)
(BLAST)
001: MPGNLEPLDL GIQIPYHFRC PISLDLMSDP VTISTGQTYD RTSIDSWIAM GNTTCPVTRV ALSDFTLIPN HTLRRLIQEW CVANRSNGVE RIPTPKQPAD
101: PISVRSLLSQ ASAITGTHVS VRSRAAAIRR LRGLARDSEK NRVLIAGHNA REILVRILFA DIETTSLSSE LVSESLALLV LLHMTETECE AVASDPSRVG
201: FMTRLLFDSS IEIRVNAAAL IEMVLTGAKS MDLKLIISGS DSIFEGVLDL LKNPISSRRA LKIGIKAIFA LCLVKQTRHL AISAGAPGIL IDRLAADFDR
301: CDTERGLATV ELLCRLPEGC AAFGEHALTV PLMVKTILRV SDRATEYAAG ALLALCTAEE RCRDEAAAAG LVTQLLLLVQ SDCTERAKRK AQMLLKLLRD
401: SWPDDSTVHS DDFNRSEVAP F
101: PISVRSLLSQ ASAITGTHVS VRSRAAAIRR LRGLARDSEK NRVLIAGHNA REILVRILFA DIETTSLSSE LVSESLALLV LLHMTETECE AVASDPSRVG
201: FMTRLLFDSS IEIRVNAAAL IEMVLTGAKS MDLKLIISGS DSIFEGVLDL LKNPISSRRA LKIGIKAIFA LCLVKQTRHL AISAGAPGIL IDRLAADFDR
301: CDTERGLATV ELLCRLPEGC AAFGEHALTV PLMVKTILRV SDRATEYAAG ALLALCTAEE RCRDEAAAAG LVTQLLLLVQ SDCTERAKRK AQMLLKLLRD
401: SWPDDSTVHS DDFNRSEVAP F
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.