Factsheet for GSMUA_Achr6P25670_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, endoplasmic reticulum, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P08750_001	Banana	cytosol, plasma membrane, plastid	63.08	78.26
GSMUA_Achr1P13220_001	Banana	cytosol	69.86	75.51
EES06938	Sorghum	extracellular	62.15	65.36
Zm00001d050712_P001	Maize	extracellular, plastid	60.51	63.33
Zm00001d016764_P001	Maize	extracellular	61.68	63.16
Os02t0548700-00	Rice	cytosol, extracellular, plastid	60.98	62.59
TraesCS6B01G268300.1	Wheat	extracellular	59.35	62.41
TraesCS6A01G256700.1	Wheat	extracellular	58.88	61.92
TraesCS6D01G237900.1	Wheat	extracellular	58.64	61.67
Solyc01g107980.2.1	Tomato	cytosol	53.74	55.42
PGSC0003DMT400066588	Potato	cytosol	53.74	55.42
KRH50316	Soybean	cytosol, plasma membrane, plastid	51.17	52.9
KRH70657	Soybean	cytosol	50.93	52.53
VIT_03s0063g00180.t01	Wine grape	cytosol	50.23	51.81
CDX99233	Canola	cytosol, peroxisome, plastid	49.07	49.88
CDY50158	Canola	cytosol	48.6	49.88
Bra038205.1-P	Field mustard	cytosol	48.36	49.64
CDX95458	Canola	cytosol	48.36	49.64
CDX92328	Canola	cytosol	48.6	49.17
AT3G19380.1	Thale cress	cytosol, golgi, plastid	48.36	49.17
Bra022415.1-P	Field mustard	cytosol	48.13	48.82
Bra022417.1-P	Field mustard	cytosol	48.13	48.82
CDY16513	Canola	cytosol	48.13	48.7
CDY59286	Canola	cytosol	48.13	48.7
Bra014206.1-P	Field mustard	cytosol	48.13	48.7
AT1G49780.1	Thale cress	cytoskeleton, cytosol, vacuole	47.66	48.46
GSMUA_Achr10P...	Banana	cytosol	26.87	31.51
GSMUA_Achr11P...	Banana	mitochondrion	31.07	31.29
GSMUA_Achr10P...	Banana	cytosol	27.34	31.12
GSMUA_Achr6P11310_001	Banana	cytosol	27.57	31.05
GSMUA_Achr7P18640_001	Banana	mitochondrion	27.1	30.61
GSMUA_Achr8P30420_001	Banana	mitochondrion	19.39	30.4
GSMUA_Achr6P02470_001	Banana	mitochondrion	26.87	30.26
GSMUA_Achr8P30400_001	Banana	cytosol	25.93	30.25
GSMUA_Achr5P01000_001	Banana	cytosol	25.0	30.14
GSMUA_Achr7P03220_001	Banana	cytosol	21.73	30.0
GSMUA_Achr11P...	Banana	cytosol	25.7	29.49
GSMUA_Achr2P20690_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	27.57	29.43
GSMUA_Achr3P02030_001	Banana	plastid	28.04	28.64
GSMUA_Achr7P23310_001	Banana	cytosol, peroxisome, plastid	26.17	28.14
GSMUA_Achr5P01020_001	Banana	cytosol	26.17	27.93
GSMUA_Achr6P18140_001	Banana	cytosol	26.4	27.63
GSMUA_Achr11P...	Banana	cytosol	23.36	27.32
GSMUA_Achr1P16250_001	Banana	cytosol	24.53	25.8
GSMUA_Achr10P...	Banana	plastid	23.13	25.78
GSMUA_Achr5P13860_001	Banana	cytosol	17.29	24.42
GSMUA_Achr3P18060_001	Banana	cytosol	21.03	23.62
GSMUA_Achr4P07400_001	Banana	cytosol	23.83	23.5
GSMUA_Achr3P25750_001	Banana	cytosol	22.66	22.61
GSMUA_Achr8P04940_001	Banana	cytosol	22.66	22.45
GSMUA_Achr2P08620_001	Banana	cytosol	22.2	21.89
GSMUA_Achr9P29630_001	Banana	cytosol	26.87	18.61

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-type_fold	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr6G25670_001	EnsemblPlants:GSMUA_Achr6P25670_001	EnsemblPlants:GSMUA_Achr6T25670_001	InterPro:IPR003613
InterPro:IPR013083	UniProt:M0TA63	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF56
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI000296CAB8	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

U-box domain-containing protein 25 [Source:GMGC_GENE;Acc:GSMUA_Achr6G25670_001]

Coordinates

chr6:+:26728664..26729950

Molecular Weight (calculated)

44864.5 Da

IEP (calculated)

8.350

GRAVY (calculated)

0.172

Length

428 amino acids

Sequence
(BLAST)

001: MPGSVAPLDL AGVTIPHHFR CPISLELMRD PVTMCTGQTY DRASIESWMA TGNTTCPVTR APLTDFTLIP NHNLRRLIQD WCVAHRSLGV ERIPTPKQPA
101: DPSLVRSLLD SAAASSFSAS RVAALRRLRS LARESDKNRA VISTHETRSA LVEIAFEGGE QLELPEADQP ALEAMAVLAM LPLTETESVA VASRPERLCR
201: LGEMVRRHAS MEARINAAAV IEAVAVGARS AETRASVGGT NGVVVGLVAL AEQRGNPRAV RVGIRGLFAL CLAKENRGRA VAAGAAAAVV GRLGELASSD
301: AERALATVEL LCRVEGGREA VVAGWGGGDA AVVALVRAMA GKASWRAAEH AAGALLAVLG PSEALQMVAV AAGVVGHLLM LVQGGCSDRA EEGTAPPQAP
401: PLCLASLRLH RQLRRLPPTI LNTLSISL

Best Arabidopsis Sequence Match ( AT3G19380.1 )
(BLAST)

001: MPRNIEPLDL GIQIPYHFRC PISLELMQDP VTVCTGQTYD RASIESWVSI GNNTTCPVTR APLSDFTLIP NHTLRRLIQE WCVANRSNGV ERIPTPKQPA
101: DPTSVRALLS QASAITGTHV SVRSRAAALR RLRGFARDSD KNRVLIAAHN ATEILIKILF SETTSSELVS ESLALLVMLP ITEPNQFVSI SSDPGRVEFL
201: TRLLFDSSIE TRVNAAALIE IVSTGTKSAD LKGSISNSES VFEGVLDLLR NPISSRRALK IGIKTLFALC SVKSTRHIAI TAGAPEILID RLAADFDRCD
301: TERALATVEL LCRTPEGCAA FGEHALTVPL LVKTILRVSD RATEYAAGAL LALCTAEERW REEAAGAGVV VQLLLMVQSE CTERAKKKAQ KLLKLLRDSW
401: PDYNSFANSD DFGCSSQVVP F

Arabidopsis Description

PUB25U-box domain-containing protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT79]
SUBAcon: [golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.