CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH70657	Soybean	cytosol	95.17	94.94
PGSC0003DMT400066588	Potato	cytosol	75.6	75.42
VIT_03s0063g00180.t01	Wine grape	cytosol	75.36	75.18
Solyc01g107980.2.1	Tomato	cytosol	74.88	74.7
Bra038205.1-P	Field mustard	cytosol	69.81	69.3
CDY50158	Canola	cytosol	69.32	68.82
CDX95458	Canola	cytosol	68.84	68.35
CDX99233	Canola	cytosol, peroxisome, plastid	68.36	67.22
AT3G19380.1	Thale cress	cytosol, golgi, plastid	68.36	67.22
CDX92328	Canola	cytosol	68.6	67.14
Bra022417.1-P	Field mustard	cytosol	68.36	67.06
Bra022415.1-P	Field mustard	cytosol	68.36	67.06
CDY16513	Canola	cytosol	68.36	66.9
CDY59286	Canola	cytosol	68.36	66.9
Bra014206.1-P	Field mustard	cytosol	68.36	66.9
AT1G49780.1	Thale cress	cytoskeleton, cytosol, vacuole	67.15	66.03
GSMUA_Achr9P08750_001	Banana	cytosol, plasma membrane, plastid	48.31	57.97
EES06938	Sorghum	extracellular	52.42	53.32
GSMUA_Achr1P13220_001	Banana	cytosol	50.24	52.53
Zm00001d016764_P001	Maize	extracellular	52.66	52.15
Zm00001d050712_P001	Maize	extracellular, plastid	51.45	52.08
Os02t0548700-00	Rice	cytosol, extracellular, plastid	52.17	51.8
GSMUA_Achr6P25670_001	Banana	cytosol	52.9	51.17
TraesCS6B01G268300.1	Wheat	extracellular	50.0	50.86
TraesCS6A01G256700.1	Wheat	extracellular	50.0	50.86
TraesCS6D01G237900.1	Wheat	extracellular	50.0	50.86
KRH72176	Soybean	cytosol	33.82	33.49
KRH32856	Soybean	cytosol	33.57	33.1
KRH72180	Soybean	cytosol	18.12	32.33
KRH26691	Soybean	cytosol	29.71	31.78
KRH68014	Soybean	cytosol	31.88	31.43
KRH64033	Soybean	cytosol	29.71	31.3
KRH22633	Soybean	cytosol, nucleus	30.43	31.27
KRH35744	Soybean	cytosol	31.64	31.26
KRH53906	Soybean	cytosol	29.71	31.22
KRH72959	Soybean	cytosol, mitochondrion	32.85	31.05
KRG97963	Soybean	mitochondrion	31.88	30.63
KRH30918	Soybean	mitochondrion	32.13	30.57
KRH39018	Soybean	mitochondrion	32.13	30.37
KRG96257	Soybean	cytosol	30.68	30.31
KRG96268	Soybean	cytosol	30.43	30.07
KRH48691	Soybean	cytosol	31.4	29.75
KRH40934	Soybean	cytosol	27.78	29.64
KRH17309	Soybean	cytosol, mitochondrion	31.16	29.39
KRH68013	Soybean	cytosol	20.53	28.72
KRH25324	Soybean	cytosol	24.64	28.1
KRH59579	Soybean	cytosol	25.36	28.07
KRH25323	Soybean	cytosol	26.81	27.48
KRG88869	Soybean	cytosol	27.54	27.34
KRH22634	Soybean	cytosol	27.05	26.54
KRH55660	Soybean	cytosol	7.97	26.4
KRH26690	Soybean	cytosol	26.81	26.0
KRH61438	Soybean	cytosol	25.85	25.36
KRH52124	Soybean	cytosol	25.85	25.18
KRH43397	Soybean	cytosol	25.36	25.12
KRH53869	Soybean	cytosol	25.12	24.94
KRH59546	Soybean	cytosol	25.12	24.88
KRH58142	Soybean	cytosol	26.57	24.77
KRH05554	Soybean	cytosol	24.88	24.58
KRG88755	Soybean	cytosol	25.36	24.42
KRH36899	Soybean	cytosol	21.5	23.99
KRH77156	Soybean	cytosol	25.36	23.39
KRH08734	Soybean	mitochondrion	22.71	22.71
KRH70331	Soybean	mitochondrion	21.98	22.36
KRH28330	Soybean	plastid	25.6	20.62

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	EMBL:ACUP02004680	InterPro:ARM-like	InterPro:ARM-type_fold
EnsemblPlantsGene:GLYMA_07G214300	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
UniProt:I1KM13	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	EnsemblPlants:KRH50316	ProteinID:KRH50316
ProteinID:KRH50316.1	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF56	SMART:SM00504
SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0002338385	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg

Description

hypothetical protein

Coordinates

chr7:+:38646869..38649044

Molecular Weight (calculated)

45138.8 Da

IEP (calculated)

7.423

GRAVY (calculated)

0.136

Length

414 amino acids

Sequence
(BLAST)

001: MPGSLEPLDL GVHIPYHFRC PISLELMRDP VTVCTGQTYD RASIESWVST GNTTCPVTRA TLSDFTLIPN HTLRRLIQEW CVANRAFGVE RIPTPKQPAD
101: PALVRSLLNQ ASSDSAPAHL RLSSLRRLRQ LARDSDKNRS LIASHNLLQI LLPIVFNNGS DELSHESLAL LVMFPLGESE CASLASDSMK IGYLSRMLAH
201: NSFDVRVNSA ALVEIVVVGT HSPELRAEVS SVDEIYDGVV DLLRSPISHP RALKIGIKAL FALCLVKNTR QKAVAAGAPA VLVDRLADFE KCDAERALAT
301: VELLCRIPAG CAAFAAHALT VPMLVKIILK ISNRATEYAA GALLSLCSES ERCQREAVAA GVLTQLLLLM QSDCTERAKR KAQMLLKLLR DSWPQDSVGN
401: SDDFACSQVV VVPF

Best Arabidopsis Sequence Match ( AT1G49780.1 )
(BLAST)

001: MPGNLEPLDL GIQIPYHFRC PISLDLMSDP VTISTGQTYD RTSIDSWIAM GNTTCPVTRV ALSDFTLIPN HTLRRLIQEW CVANRSNGVE RIPTPKQPAD
101: PISVRSLLSQ ASAITGTHVS VRSRAAAIRR LRGLARDSEK NRVLIAGHNA REILVRILFA DIETTSLSSE LVSESLALLV LLHMTETECE AVASDPSRVG
201: FMTRLLFDSS IEIRVNAAAL IEMVLTGAKS MDLKLIISGS DSIFEGVLDL LKNPISSRRA LKIGIKAIFA LCLVKQTRHL AISAGAPGIL IDRLAADFDR
301: CDTERGLATV ELLCRLPEGC AAFGEHALTV PLMVKTILRV SDRATEYAAG ALLALCTAEE RCRDEAAAAG LVTQLLLLVQ SDCTERAKRK AQMLLKLLRD
401: SWPDDSTVHS DDFNRSEVAP F

Arabidopsis Description

PUB26U-box domain-containing protein 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA4]
SUBAcon: [cytoskeleton,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.