CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
plasma membrane 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH77156	Soybean	cytosol	84.63	96.88
KRH58142	Soybean	cytosol	70.62	81.76
VIT_00s0471g00010.t01	Wine grape	cytosol	70.82	81.43
AT3G49810.1	Thale cress	cytosol	64.98	74.55
Bra029975.1-P	Field mustard	cytosol	63.81	74.04
CDX83098	Canola	cytosol	63.62	73.81
CDY53333	Canola	cytosol	64.01	73.6
KRH55660	Soybean	cytosol	17.7	72.8
AT5G65920.1	Thale cress	cytosol	61.28	70.95
CDY69247	Canola	cytosol	57.78	67.04
Bra037833.1-P	Field mustard	cytosol	57.59	66.82
CDY18670	Canola	cytosol	57.59	66.82
Zm00001d019807_P001	Maize	extracellular	11.87	64.89
KRH05554	Soybean	cytosol	52.72	64.68
KRH52124	Soybean	cytosol	53.31	64.47
KRG88755	Soybean	cytosol	53.11	63.49
KRH61438	Soybean	cytosol	51.95	63.27
HORVU4Hr1G066070.1	Barley	cytosol	53.31	59.57
Os03t0232600-01	Rice	cytosol	52.92	59.26
TraesCS4A01G060800.1	Wheat	cytosol	52.72	59.04
TraesCS4D01G237600.1	Wheat	cytosol	52.53	58.82
TraesCS4B01G236200.1	Wheat	cytosol	52.33	58.61
EER95229	Sorghum	cytosol	52.33	58.61
Zm00001d028294_P001	Maize	cytosol	51.75	57.95
Zm00001d048008_P001	Maize	cytosol	52.14	57.88
Zm00001d000044_P001	Maize	cytosol	20.23	45.02
KRH22633	Soybean	cytosol, nucleus	22.37	28.54
KRH72176	Soybean	cytosol	22.57	27.75
KRH26691	Soybean	cytosol	20.82	27.65
KRH32856	Soybean	cytosol	21.98	26.9
KRH68014	Soybean	cytosol	21.6	26.43
KRH43397	Soybean	cytosol	21.21	26.08
KRH68013	Soybean	cytosol	14.98	26.01
KRH72180	Soybean	cytosol	11.67	25.86
KRH08734	Soybean	mitochondrion	20.82	25.85
KRH59546	Soybean	cytosol	21.01	25.84
KRH35744	Soybean	cytosol	21.01	25.78
KRH50316	Soybean	cytosol, plasma membrane, plastid	20.62	25.6
KRG96257	Soybean	cytosol	20.82	25.54
KRH39018	Soybean	mitochondrion	21.6	25.34
KRH70331	Soybean	mitochondrion	20.04	25.31
KRG96268	Soybean	cytosol	20.62	25.3
KRH53906	Soybean	cytosol	19.26	25.13
KRH70657	Soybean	cytosol	20.23	25.06
KRH48691	Soybean	cytosol	21.21	24.94
KRH64033	Soybean	cytosol	19.07	24.94
KRH25324	Soybean	cytosol	17.51	24.79
KRG88869	Soybean	cytosol	20.04	24.7
KRH53869	Soybean	cytosol	20.04	24.7
KRH59579	Soybean	cytosol	17.9	24.6
KRH26690	Soybean	cytosol	20.23	24.36
KRH22634	Soybean	cytosol	19.84	24.17
KRH17309	Soybean	cytosol, mitochondrion	20.62	24.15
KRH25323	Soybean	cytosol	18.87	24.01
KRH36899	Soybean	cytosol	17.32	23.99
KRH40934	Soybean	cytosol	17.9	23.71
KRH72959	Soybean	cytosol, mitochondrion	20.04	23.52
KRG97963	Soybean	mitochondrion	19.07	22.74
KRH30918	Soybean	mitochondrion	18.09	21.38

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100816457	Gene3D:3.30.40.10	MapMan:35.1	EMBL:ACUP02006745	InterPro:ARM-like
InterPro:ARM-type_fold	EnsemblPlantsGene:GLYMA_11G046500	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0005575	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	UniProt:K7LN26	EnsemblPlants:KRH28330	ProteinID:KRH28330	ProteinID:KRH28330.1	PFAM:PF04564
PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF105	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
TMHMM:TMhelix	UniParc:UPI0002952037	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

hypothetical protein

Coordinates

chr11:-:3477604..3480726

Molecular Weight (calculated)

56197.4 Da

IEP (calculated)

6.578

GRAVY (calculated)

0.289

Length

514 amino acids

Sequence
(BLAST)

001: MLIIISFLPQ IKQISTVNPS LFPSILTSSL SRCTDLRGVC VLGFLPFLSL SALHFCVFFS IGVSKMPMFQ PCRKDLVAGY EGGGDGQILD LDTAVKDGVL
101: GGVEGGVLGG GVGEKVDLGK MIEELELCEV PSVFICPISL EPMQDPVTLC TGQTYERSNI LKWFNLGHFT CPTTMQELWD DSVTPNTTLY RLIHMWFSQK
201: YLLMKKRSED VQGRASELLE TLKKVKSQAR VQALKELHQL VASHATARKT VIDEGGVSVV SSLLGPFTSH AVGSEVIGIL VTLTLDSESR KNLLQPAKVS
301: LMVDILNEGS IETKINCTRL IESLIEEKDF RSEVILSHSL LVGLMRLVKD KRHNNGVCPG LSLLRTICLH KEVRNLLVSI GAVSQLVELL SGMEPDCLEL
401: ALCVLDALAS VPEGRVALKD CSNTIPIMVK LLMRISENCT QYALSILWSV CKLSPEECSS IAVDAGLAAK LLLVIQSGCN PILKQQSAEL LKLCSLNYSD
501: TIFLSKCKLT RTIQ

Best Arabidopsis Sequence Match ( AT3G49810.1 )
(BLAST)

001: MPMFQPLKRD GLIGFEGGGD GQVLDLDTAV KDGVLGGVNG GGVGVVDEKL DLKKMIKELD LQDIPSVFIC PISLEPMQDP VTLCTGQTYE RLNIHKWFNL
101: GHLTCPTTMQ ELWDDTVTPN KTLHHLIYTW FSQKYVLMKK RSEDVQGRAI EILGTLKKAK GQARVHALSE LKQIVIAHLM ARKTVVEEGG VSVISSLLGP
201: FTSHAVGSEV VAILVSLDLD SDSKSGLMQP AKVSLIVDML NDGSNETKIN CARLIRGLVE EKGFRAELVS SHSLLVGLMR LVKDKRHRNG VSPALRLLKP
301: ISVHKQVRSL MVSIGAVPQL VDILPSLDPE CLELALFVLD ALCTDVEGRV AVKDSANTIP YTVRVLMRVS ENCTNYALSI LWSVCKLAPE ECSPLAVEVG
401: LAAKLLLVIQ SGCDAALKQR SAELLKLCSL HYSDTMFISK CKLTRTIQ

Arabidopsis Description

PUB30U-box domain-containing protein 30 [Source:UniProtKB/Swiss-Prot;Acc:Q058P4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.