CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59579	Soybean	cytosol	89.18	92.51
KRH64033	Soybean	cytosol	71.65	70.74
KRH53906	Soybean	cytosol	71.65	70.56
VIT_04s0044g01460.t01	Wine grape	cytosol	56.96	55.39
Solyc05g056500.1.1	Tomato	cytosol	50.52	48.88
PGSC0003DMT400060272	Potato	cytosol	49.48	47.52
HORVU2Hr1G076490.1	Barley	mitochondrion	10.57	47.13
GSMUA_Achr7P23310_001	Banana	cytosol, peroxisome, plastid	43.81	42.71
GSMUA_Achr2P20690_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	42.78	41.4
OQU81614	Sorghum	cytosol	40.98	39.95
Zm00001d003624_P001	Maize	cytosol	40.46	39.25
TraesCS2A01G307000.1	Wheat	cytosol	38.92	39.02
TraesCS2D01G305400.1	Wheat	cytosol	39.95	38.75
TraesCS2B01G323600.1	Wheat	cytosol	39.95	38.75
TraesCS7D01G393700.1	Wheat	extracellular, vacuole	36.34	36.91
HORVU7Hr1G093780.1	Barley	cytosol, endoplasmic reticulum, extracellular	37.11	36.83
TraesCS7A01G399900.1	Wheat	extracellular, vacuole	36.34	36.81
TraesCS7B01G300000.1	Wheat	cytosol, extracellular, nucleus	35.82	36.2
Os04t0437300-01	Rice	cytosol	39.43	35.92
KRH50316	Soybean	cytosol, plasma membrane, plastid	29.64	27.78
KRH26691	Soybean	cytosol	27.32	27.39
KRH70657	Soybean	cytosol	29.12	27.23
KRH55660	Soybean	cytosol	8.76	27.2
KRH22633	Soybean	cytosol, nucleus	28.09	27.05
KRH72180	Soybean	cytosol	15.98	26.72
KRH72176	Soybean	cytosol	27.32	25.36
KRH53869	Soybean	cytosol	26.8	24.94
KRH59546	Soybean	cytosol	26.8	24.88
KRH32856	Soybean	cytosol	26.8	24.76
KRH36899	Soybean	cytosol	23.2	24.26
KRH43397	Soybean	cytosol	26.03	24.16
KRH68014	Soybean	cytosol	25.52	23.57
KRH25324	Soybean	cytosol	21.91	23.42
KRH68013	Soybean	cytosol	17.78	23.31
KRG97963	Soybean	mitochondrion	25.77	23.2
KRH39018	Soybean	mitochondrion	26.03	23.06
KRG96257	Soybean	cytosol	24.74	22.91
KRG96268	Soybean	cytosol	24.48	22.67
KRH48691	Soybean	cytosol	25.26	22.43
KRH22634	Soybean	cytosol	24.23	22.27
KRH26690	Soybean	cytosol	24.48	22.25
KRH05554	Soybean	cytosol	23.97	22.2
KRH35744	Soybean	cytosol	23.97	22.2
KRH52124	Soybean	cytosol	24.23	22.12
KRH25323	Soybean	cytosol	22.94	22.03
KRG88755	Soybean	cytosol	24.23	21.86
KRH30918	Soybean	mitochondrion	24.48	21.84
KRH61438	Soybean	cytosol	23.45	21.56
KRH17309	Soybean	cytosol, mitochondrion	23.71	20.96
KRG88869	Soybean	cytosol	22.42	20.86
KRH72959	Soybean	cytosol, mitochondrion	23.45	20.78
KRH77156	Soybean	cytosol	23.45	20.27
KRH70331	Soybean	mitochondrion	21.13	20.15
KRH58142	Soybean	cytosol	22.94	20.05
KRH08734	Soybean	mitochondrion	20.62	19.32
KRH28330	Soybean	plastid	23.71	17.9

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100805322	Gene3D:3.30.40.10	MapMan:35.1	EMBL:ACUP02004739	InterPro:ARM-like
InterPro:ARM-type_fold	ncoils:Coil	EnsemblPlantsGene:GLYMA_08G000400	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842
GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	UniProt:K7L464
EnsemblPlants:KRH40934	ProteinID:KRH40934	ProteinID:KRH40934.1	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849
PANTHER:PTHR22849:SF103	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	UniParc:UPI0002338593	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:36490..37656

Molecular Weight (calculated)

43235.4 Da

IEP (calculated)

5.177

GRAVY (calculated)

-0.066

Length

388 amino acids

Sequence
(BLAST)

001: MNESQNAIPH LFRCPISLDL FEDPVTLCTG QTYDRSNIEK WLAQGNLTCP VTMQKLHDPS IVPNHTLRHL IDQWLQLDPQ FDPANPEAST IESLASLKLN
101: LESYESSLEN KLQALRKISV LSDEYCSFNK SCFLQLDFLP LLLELVFGTQ VSPENDMNFI ELALCCIKKL LPLGSLEPLN MIKDGSKLAT FVLLFEKGTN
201: SVKTSLCRVI ESASSSSSET EDLCSTLGKT NELVHEIVQV VNQNYEVSGD AIKAMSALCS LQSNRESLVR GGAIEEIMRY ITSSERRNMA PVAMRIVEKL
301: MGLRSAKEAL VNHPNGVQTL VNMVFRVSDQ KCSESAVEVL LTVCGEFERA REEAIESGVL TRLLLLLQSQ CSNTTKSKAR MLLKLLRS

Best Arabidopsis Sequence Match ( AT3G19380.1 )
(BLAST)

001: MPRNIEPLDL GIQIPYHFRC PISLELMQDP VTVCTGQTYD RASIESWVSI GNNTTCPVTR APLSDFTLIP NHTLRRLIQE WCVANRSNGV ERIPTPKQPA
101: DPTSVRALLS QASAITGTHV SVRSRAAALR RLRGFARDSD KNRVLIAAHN ATEILIKILF SETTSSELVS ESLALLVMLP ITEPNQFVSI SSDPGRVEFL
201: TRLLFDSSIE TRVNAAALIE IVSTGTKSAD LKGSISNSES VFEGVLDLLR NPISSRRALK IGIKTLFALC SVKSTRHIAI TAGAPEILID RLAADFDRCD
301: TERALATVEL LCRTPEGCAA FGEHALTVPL LVKTILRVSD RATEYAAGAL LALCTAEERW REEAAGAGVV VQLLLMVQSE CTERAKKKAQ KLLKLLRDSW
401: PDYNSFANSD DFGCSSQVVP F

Arabidopsis Description

PUB25U-box domain-containing protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT79]
SUBAcon: [golgi,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.