Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH64033 | Soybean | cytosol | 58.9 | 59.8 |
| KRH53906 | Soybean | cytosol | 58.4 | 59.14 |
| KRH40934 | Soybean | cytosol | 55.39 | 56.96 |
| KRH59579 | Soybean | cytosol | 50.88 | 54.28 |
| Solyc05g056500.1.1 | Tomato | cytosol | 51.38 | 51.12 |
| PGSC0003DMT400060272 | Potato | cytosol | 50.63 | 50.0 |
| HORVU2Hr1G076490.1 | Barley | mitochondrion | 10.78 | 49.43 |
| GSMUA_Achr7P23310_001 | Banana | cytosol, peroxisome, plastid | 48.87 | 48.99 |
| GSMUA_Achr2P20690_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 48.87 | 48.63 |
| OQU81614 | Sorghum | cytosol | 43.86 | 43.97 |
| TraesCS2A01G307000.1 | Wheat | cytosol | 41.6 | 42.89 |
| Zm00001d003624_P001 | Maize | cytosol | 42.86 | 42.75 |
| TraesCS2B01G323600.1 | Wheat | cytosol | 42.61 | 42.5 |
| TraesCS2D01G305400.1 | Wheat | cytosol | 42.61 | 42.5 |
| Os04t0437300-01 | Rice | cytosol | 44.11 | 41.31 |
| TraesCS7A01G399900.1 | Wheat | extracellular, vacuole | 39.35 | 40.99 |
| TraesCS7D01G393700.1 | Wheat | extracellular, vacuole | 38.6 | 40.31 |
| HORVU7Hr1G093780.1 | Barley | cytosol, endoplasmic reticulum, extracellular | 39.1 | 39.9 |
| TraesCS7B01G300000.1 | Wheat | cytosol, extracellular, nucleus | 38.35 | 39.84 |
| VIT_03s0063g00180.t01 | Wine grape | cytosol | 30.83 | 29.64 |
| VIT_04s0044g00870.t01 | Wine grape | cytosol | 27.32 | 26.46 |
| VIT_01s0011g06140.t01 | Wine grape | mitochondrion | 28.57 | 25.79 |
| VIT_06s0009g00320.t01 | Wine grape | cytosol | 26.57 | 25.6 |
| VIT_08s0105g00180.t01 | Wine grape | cytosol, plastid, vacuole | 26.07 | 25.3 |
| VIT_08s0105g00190.t01 | Wine grape | cytosol, plastid, vacuole | 26.07 | 25.3 |
| VIT_18s0166g00190.t01 | Wine grape | plasma membrane | 25.31 | 25.25 |
| VIT_06s0009g00370.t01 | Wine grape | cytosol | 24.31 | 23.95 |
| VIT_08s0105g00200.t01 | Wine grape | cytosol | 24.31 | 23.89 |
| VIT_18s0001g08790.t01 | Wine grape | cytosol | 24.81 | 21.9 |
| VIT_00s0471g00010.t01 | Wine grape | cytosol | 24.31 | 21.7 |
Protein Annotations
| Gene3D:1.25.10.10 | EntrezGene:100267170 | wikigene:100267170 | Gene3D:3.30.40.10 | MapMan:35.1 | EMBL:AM479696 |
| InterPro:ARM-like | InterPro:ARM-type_fold | ProteinID:CAN66286 | ProteinID:CAN66286.1 | ProteinID:CCB60402 | ProteinID:CCB60402.1 |
| UniProt:F6I0D6 | EMBL:FN596506 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 |
| GO:GO:0019538 | InterPro:IPR003613 | InterPro:IPR011989 | InterPro:IPR013083 | EntrezGene:LOC100267170 | wikigene:LOC100267170 |
| PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF103 | SMART:SM00504 | SUPFAM:SSF48371 |
| SUPFAM:SSF57850 | UniParc:UPI000210949F | InterPro:Ubox_domain | ArrayExpress:VIT_04s0044g01460 | EnsemblPlantsGene:VIT_04s0044g01460 | EnsemblPlants:VIT_04s0044g01460.t01 |
| RefSeq:XP_002262704 | RefSeq:XP_002262704.2 | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:F6I0D6]
Coordinates
chr4:-:22979959..22981350
Molecular Weight (calculated)
43604.2 Da
IEP (calculated)
5.622
GRAVY (calculated)
0.073
Length
399 amino acids
Sequence
(BLAST)
(BLAST)
001: MNEAEMVIPH LFRCPISLDL FTDPVTLSTG QTYDRSSIEQ WLAAGNLTCP VTMQKLHDPS MVPNHTLRHL IDQWLQTGQQ VDPESLTVMG PGPSLAAMKC
101: SLQSQESSLE NKLETLKAIR VSSDELSSRN SYMIQLGFLP LLLELVFGQV EAEQYRDSLK LVEEALSCAL KLLAFSELGC LNMLKEESKL ESLVVLFKHG
201: TPMIKTSVCN LLEAISSSSE TKELCATLGT THQLLQGIVL LVHHDCEASE AGIKAMLALC SVESNKENLI REGAVDGLIS YISNAQVKEK SAAPLAIAVL
301: EVLLGVESGR EAVLNNPNGV KALVKMTFKV SDHQGSENAV SSLMVLCTDS LRAREEAISA GVLSQLLFLL QSQCSGTIKT KARMLLKLLR SKRIMDQNH
101: SLQSQESSLE NKLETLKAIR VSSDELSSRN SYMIQLGFLP LLLELVFGQV EAEQYRDSLK LVEEALSCAL KLLAFSELGC LNMLKEESKL ESLVVLFKHG
201: TPMIKTSVCN LLEAISSSSE TKELCATLGT THQLLQGIVL LVHHDCEASE AGIKAMLALC SVESNKENLI REGAVDGLIS YISNAQVKEK SAAPLAIAVL
301: EVLLGVESGR EAVLNNPNGV KALVKMTFKV SDHQGSENAV SSLMVLCTDS LRAREEAISA GVLSQLLFLL QSQCSGTIKT KARMLLKLLR SKRIMDQNH
001: MPGNLEPLDL GIQIPYHFRC PISLDLMSDP VTISTGQTYD RTSIDSWIAM GNTTCPVTRV ALSDFTLIPN HTLRRLIQEW CVANRSNGVE RIPTPKQPAD
101: PISVRSLLSQ ASAITGTHVS VRSRAAAIRR LRGLARDSEK NRVLIAGHNA REILVRILFA DIETTSLSSE LVSESLALLV LLHMTETECE AVASDPSRVG
201: FMTRLLFDSS IEIRVNAAAL IEMVLTGAKS MDLKLIISGS DSIFEGVLDL LKNPISSRRA LKIGIKAIFA LCLVKQTRHL AISAGAPGIL IDRLAADFDR
301: CDTERGLATV ELLCRLPEGC AAFGEHALTV PLMVKTILRV SDRATEYAAG ALLALCTAEE RCRDEAAAAG LVTQLLLLVQ SDCTERAKRK AQMLLKLLRD
401: SWPDDSTVHS DDFNRSEVAP F
101: PISVRSLLSQ ASAITGTHVS VRSRAAAIRR LRGLARDSEK NRVLIAGHNA REILVRILFA DIETTSLSSE LVSESLALLV LLHMTETECE AVASDPSRVG
201: FMTRLLFDSS IEIRVNAAAL IEMVLTGAKS MDLKLIISGS DSIFEGVLDL LKNPISSRRA LKIGIKAIFA LCLVKQTRHL AISAGAPGIL IDRLAADFDR
301: CDTERGLATV ELLCRLPEGC AAFGEHALTV PLMVKTILRV SDRATEYAAG ALLALCTAEE RCRDEAAAAG LVTQLLLLVQ SDCTERAKRK AQMLLKLLRD
401: SWPDDSTVHS DDFNRSEVAP F
Arabidopsis Description
PUB26U-box domain-containing protein 26 [Source:UniProtKB/Swiss-Prot;Acc:Q9FXA4]
SUBAcon: [cytoskeleton,vacuole,cytosol]
SUBAcon: [cytoskeleton,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.