Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- endoplasmic reticulum 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU81614 | Sorghum | cytosol | 89.5 | 89.95 |
| HORVU2Hr1G076490.1 | Barley | mitochondrion | 17.5 | 80.46 |
| TraesCS2D01G305400.1 | Wheat | cytosol | 73.25 | 73.25 |
| Os04t0437300-01 | Rice | cytosol | 77.75 | 73.0 |
| TraesCS2B01G323600.1 | Wheat | cytosol | 73.0 | 73.0 |
| TraesCS2A01G307000.1 | Wheat | cytosol | 70.0 | 72.35 |
| GSMUA_Achr2P20690_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 52.25 | 52.12 |
| Zm00001d019807_P001 | Maize | extracellular | 10.75 | 45.74 |
| GSMUA_Achr7P23310_001 | Banana | cytosol, peroxisome, plastid | 45.25 | 45.48 |
| VIT_04s0044g01460.t01 | Wine grape | cytosol | 42.75 | 42.86 |
| KRH40934 | Soybean | cytosol | 39.25 | 40.46 |
| KRH59579 | Soybean | cytosol | 37.75 | 40.37 |
| KRH53906 | Soybean | cytosol | 39.75 | 40.36 |
| KRH64033 | Soybean | cytosol | 39.0 | 39.69 |
| Solyc05g056500.1.1 | Tomato | cytosol | 37.25 | 37.16 |
| PGSC0003DMT400060272 | Potato | cytosol | 37.0 | 36.63 |
| Zm00001d016764_P001 | Maize | extracellular | 30.5 | 29.19 |
| Zm00001d050712_P001 | Maize | extracellular, plastid | 29.75 | 29.1 |
| Zm00001d001769_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome | 27.75 | 28.32 |
| Zm00001d050689_P001 | Maize | cytosol | 28.75 | 26.81 |
| Zm00001d042738_P001 | Maize | cytosol | 27.25 | 26.72 |
| Zm00001d016719_P001 | Maize | cytosol | 28.5 | 26.57 |
| Zm00001d025379_P001 | Maize | cytosol, mitochondrion, peroxisome, plastid | 29.25 | 26.35 |
| Zm00001d044734_P001 | Maize | mitochondrion | 29.0 | 26.24 |
| Zm00001d016730_P001 | Maize | cytosol | 28.0 | 25.69 |
| Zm00001d028294_P001 | Maize | cytosol | 29.0 | 25.27 |
| Zm00001d048008_P001 | Maize | cytosol | 28.25 | 24.41 |
| Zm00001d017976_P001 | Maize | mitochondrion | 27.5 | 24.34 |
| Zm00001d003745_P001 | Maize | nucleus | 27.25 | 24.33 |
| Zm00001d026040_P001 | Maize | cytosol | 24.5 | 23.96 |
| Zm00001d002498_P001 | Maize | cytosol | 24.5 | 23.61 |
| Zm00001d038280_P001 | Maize | cytosol | 26.25 | 23.23 |
| Zm00001d030251_P001 | Maize | cytosol | 25.75 | 23.2 |
| Zm00001d017671_P001 | Maize | cytosol | 24.0 | 22.59 |
| Zm00001d000044_P001 | Maize | cytosol | 13.0 | 22.51 |
| Zm00001d028374_P001 | Maize | mitochondrion | 24.5 | 21.92 |
| Zm00001d023480_P001 | Maize | cytosol | 25.25 | 18.07 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | UniProt:A0A1D6EA92 | InterPro:ARM-like | InterPro:ARM-type_fold |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR003613 |
| InterPro:IPR011989 | InterPro:IPR013083 | ProteinID:ONM17300.1 | PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR22849 |
| PANTHER:PTHR22849:SF103 | SMART:SM00504 | SUPFAM:SSF48371 | SUPFAM:SSF57850 | UniParc:UPI000221B026 | InterPro:Ubox_domain |
| EnsemblPlantsGene:Zm00001d003624 | EnsemblPlants:Zm00001d003624_P001 | EnsemblPlants:Zm00001d003624_T001 | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
U-box domain-containing protein 26
Coordinates
chr2:-:50750672..50751874
Molecular Weight (calculated)
41642.6 Da
IEP (calculated)
8.678
GRAVY (calculated)
0.245
Length
400 amino acids
Sequence
(BLAST)
(BLAST)
001: MSIPHLFRCP ISLDIFTDPV TLCTGQTYDR PCIERWLAAG HRTCPVTMQP LGDAALVPNR TLRHLIERWL SADHQISDAT TPAAAAATSD DNAEEPSLAA
101: LKRCLQSGAG SGAKVAALKK GVALASESDV GRACMLQLGF LPVLLQLVFH APTTRDLSEQ EGLALQCALT LLPSSPASPQ HGCLNMLKTE ASLTSFVGLL
201: ARGPAAAKAG LCRLLETIAT AAATRDLALA AAASPRVWQA LLPLLRHDDE RVSVAAVRAV AAICCAAEPA RGSAVHHGAV PALLGCLAWA SAGKGRGAAA
301: WSALAALEAL AASEAGRRAV ARDPGAVRSL VRHVFMMSSS NEGSEHAVAA LLAVCRESRA ARTEAAAAGL VTQVLLLLQS QCGTRAKTRA RSLLKMFKSM
101: LKRCLQSGAG SGAKVAALKK GVALASESDV GRACMLQLGF LPVLLQLVFH APTTRDLSEQ EGLALQCALT LLPSSPASPQ HGCLNMLKTE ASLTSFVGLL
201: ARGPAAAKAG LCRLLETIAT AAATRDLALA AAASPRVWQA LLPLLRHDDE RVSVAAVRAV AAICCAAEPA RGSAVHHGAV PALLGCLAWA SAGKGRGAAA
301: WSALAALEAL AASEAGRRAV ARDPGAVRSL VRHVFMMSSS NEGSEHAVAA LLAVCRESRA ARTEAAAAGL VTQVLLLLQS QCGTRAKTRA RSLLKMFKSM
001: MPRNIEPLDL GIQIPYHFRC PISLELMQDP VTVCTGQTYD RASIESWVSI GNNTTCPVTR APLSDFTLIP NHTLRRLIQE WCVANRSNGV ERIPTPKQPA
101: DPTSVRALLS QASAITGTHV SVRSRAAALR RLRGFARDSD KNRVLIAAHN ATEILIKILF SETTSSELVS ESLALLVMLP ITEPNQFVSI SSDPGRVEFL
201: TRLLFDSSIE TRVNAAALIE IVSTGTKSAD LKGSISNSES VFEGVLDLLR NPISSRRALK IGIKTLFALC SVKSTRHIAI TAGAPEILID RLAADFDRCD
301: TERALATVEL LCRTPEGCAA FGEHALTVPL LVKTILRVSD RATEYAAGAL LALCTAEERW REEAAGAGVV VQLLLMVQSE CTERAKKKAQ KLLKLLRDSW
401: PDYNSFANSD DFGCSSQVVP F
101: DPTSVRALLS QASAITGTHV SVRSRAAALR RLRGFARDSD KNRVLIAAHN ATEILIKILF SETTSSELVS ESLALLVMLP ITEPNQFVSI SSDPGRVEFL
201: TRLLFDSSIE TRVNAAALIE IVSTGTKSAD LKGSISNSES VFEGVLDLLR NPISSRRALK IGIKTLFALC SVKSTRHIAI TAGAPEILID RLAADFDRCD
301: TERALATVEL LCRTPEGCAA FGEHALTVPL LVKTILRVSD RATEYAAGAL LALCTAEERW REEAAGAGVV VQLLLMVQSE CTERAKKKAQ KLLKLLRDSW
401: PDYNSFANSD DFGCSSQVVP F
Arabidopsis Description
PUB25U-box domain-containing protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT79]
SUBAcon: [golgi,plastid,cytosol]
SUBAcon: [golgi,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.