Factsheet for Zm00001d028374_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92576	Sorghum	mitochondrion	94.18	92.73
TraesCS4D01G229900.1	Wheat	mitochondrion	79.19	80.45
TraesCS4B01G228700.1	Wheat	mitochondrion	78.97	80.23
Os03t0240600-01	Rice	plastid	78.52	78.88
HORVU4Hr1G064070.1	Barley	mitochondrion	77.18	78.41
GSMUA_Achr6P11310_001	Banana	cytosol	44.52	52.37
GSMUA_Achr11P...	Banana	mitochondrion	49.66	52.24
Zm00001d044734_P001	Maize	mitochondrion	50.78	51.36
GSMUA_Achr10P...	Banana	cytosol	42.51	50.53
GSMUA_Achr7P18640_001	Banana	mitochondrion	42.28	49.87
GSMUA_Achr6P02470_001	Banana	mitochondrion	40.94	48.16
Zm00001d017976_P001	Maize	mitochondrion	48.1	47.57
Zm00001d030251_P001	Maize	cytosol	45.86	46.17
VIT_01s0011g06140.t01	Wine grape	mitochondrion	45.64	46.15
KRH48691	Soybean	cytosol	42.28	43.25
GSMUA_Achr3P02030_001	Banana	plastid	40.49	43.2
KRH39018	Soybean	mitochondrion	41.39	42.24
KRH72959	Soybean	cytosol, mitochondrion	40.72	41.55
KRH17309	Soybean	cytosol, mitochondrion	40.72	41.46
PGSC0003DMT400058621	Potato	cytosol, mitochondrion	41.61	41.24
KRG97963	Soybean	mitochondrion	39.37	40.84
KRH30918	Soybean	mitochondrion	39.37	40.46
PGSC0003DMT400073836	Potato	cytosol	37.81	40.33
Solyc01g005160.2.1	Tomato	mitochondrion	40.49	40.22
Solyc04g008100.1.1	Tomato	cytosol	39.15	39.59
Solyc11g006030.1.1	Tomato	cytosol	38.03	39.53
PGSC0003DMT400075778	Potato	mitochondrion	38.03	38.46
CDY16432	Canola	cytosol	35.35	36.92
Bra039752.1-P	Field mustard	cytosol	34.68	36.73
CDY50319	Canola	cytosol	34.9	36.53
Zm00001d019807_P001	Maize	extracellular	7.61	36.17
AT5G37490.1	Thale cress	cytosol, nucleus, peroxisome	34.9	35.86
Bra025442.1-P	Field mustard	mitochondrion	34.68	35.39
AT1G66160.1	Thale cress	cytosol	34.0	35.27
CDY27655	Canola	mitochondrion	34.23	34.93
CDX99694	Canola	mitochondrion	34.0	34.7
Zm00001d050712_P001	Maize	extracellular, plastid	30.2	33.01
AT3G02840.1	Thale cress	mitochondrion	27.52	32.45
Zm00001d016764_P001	Maize	extracellular	30.2	32.3
CDX74232	Canola	cytosol, extracellular, mitochondrion, plastid	26.4	32.07
CDX92016	Canola	mitochondrion	26.17	31.79
CDY28714	Canola	mitochondrion	26.62	31.73
Bra040605.1-P	Field mustard	mitochondrion	26.62	31.73
Bra001067.1-P	Field mustard	mitochondrion	25.95	31.52
CDY51529	Canola	mitochondrion	26.4	31.47
Zm00001d016730_P001	Maize	cytosol	28.41	29.13
Zm00001d001769_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	25.5	29.08
Zm00001d042738_P001	Maize	cytosol	26.4	28.92
Zm00001d026040_P001	Maize	cytosol	25.28	27.63
Zm00001d002498_P001	Maize	cytosol	25.5	27.47
Zm00001d050689_P001	Maize	cytosol	25.5	26.57
Zm00001d016719_P001	Maize	cytosol	24.38	25.41
Zm00001d003745_P001	Maize	nucleus	25.28	25.22
Zm00001d017671_P001	Maize	cytosol	23.94	25.18
Zm00001d003624_P001	Maize	cytosol	21.92	24.5
Zm00001d028294_P001	Maize	cytosol	24.61	23.97
Zm00001d048008_P001	Maize	cytosol	24.61	23.76
Zm00001d025379_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	23.49	23.65
Zm00001d038280_P001	Maize	cytosol	22.37	22.12
Zm00001d023480_P001	Maize	cytosol	23.27	18.6
Zm00001d000044_P001	Maize	cytosol	9.17	17.75

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100286029	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold
UniProt:B4G225	EMBL:BT043413	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	ProteinID:ONL95836.1	PFAM:PF04564
PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF107	SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850
UniParc:UPI00017B7E38	InterPro:Ubox_domain	EnsemblPlantsGene:Zm00001d028374	EnsemblPlants:Zm00001d028374_P001	EnsemblPlants:Zm00001d028374_T001	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

U-box domain-containing protein 21

Coordinates

chr1:-:32502433..32503776

Molecular Weight (calculated)

47272.6 Da

IEP (calculated)

8.212

GRAVY (calculated)

0.225

Length

447 amino acids

Sequence
(BLAST)

001: MALLVRRARR AATKAAVSLA GRTGSVELAI PAHFRCPISL DLMRDPVTAP AGITYDRESI EAWLDTGRAT CPVTHAPLRH EDLVPNHAIR RVIQDWCVAN
101: RSRGVERIPT PKIPVTPVQA SELLFDLAGS ARRRDAAARC VEVVTKIKVL ARDSERNRSC FASIGTGRVL AAAFESLAAA AADAAAPAGR VLEDILAALV
201: CMMPLDEESA RTLALPTSLG SLVAIAENGS LAGRLNAVLA IKEVVSCDGA ATDLSGKADE IVDALAKIIK SPICPQATKA GMVATYHLAL YDERVAARLA
301: AAGLVPVLVE VLVDADKSMS EKALAVLDAV LASEEGRASA RAHALAVPML IKKMFRVSDL ATQLAVSAMW RLGKAHSDGE DDGAVTRCLV EALGVGAFQK
401: LLLLLQVGCR DATKEKATEL LKLLNKYKSV GECVDAVDFR GLNKLSS

Best Arabidopsis Sequence Match ( AT1G66160.1 )
(BLAST)

001: MGLSLRVRRR GGSVSKKEII PVTSCSEEVE ITIPSQFQCP ISYELMKDPV IIASGITYDR ENIEKWFESG YQTCPVTNTV LTSLEQIPNH TIRRMIQGWC
101: GSSLGGGIER IPTPRVPVTS HQVSEICERL SAATRRGDYA ACMEMVTKMT RLGKESERNR KCVKENGAGL VLCVCFDAFS ENANASLLLE ETVSVLTWML
201: PIGLEGQSKL TTTSSFNRLV ELLRNGDQNA AFLIKELLEL NVTHVHALTK INGVQEAFMK SINRDSTCVN SLISIHHMIL TNQETVSRFL ELDLVNITVE
301: MLVDSENSVC EKALTVLNVI CETKEGREKV RRNKLVIPIL VKKILKISEK KDLVSVMWKV CKSGDGSEVE EALRLGAFKK LVVMLQVGCG EGTKEKVTEL
401: LKMMNKVMKM NGFVDRSYSS SIEFKHVKKP F

Arabidopsis Description

PUB20U-box domain-containing protein 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8D1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.