Factsheet for Zm00001d003745_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1
mitochondrion 2
plastid 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, peroxisome, secretory
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

nucleus: 24677780

msms PMID: 24677780 doi

B Guo, Y Chen, C Li, T Wang, R Wang, B Wang, S Hu, X Du, H Xing, X Song, Y Yao, Q Sun, Z Ni

State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d010602_P001	golgi
Zm00001d038447_P001	golgi
Zm00001d043015_P001	golgi
Zm00001d044874_P001
Zm00001d052194_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35930.1	Zm00001d044874_P001	AT4G25200.1	21798944
AT2G35930.1	Zm00001d052194_P001	AT4G25200.1	21798944
AT3G52450.1	Zm00001d010602_P001	AT1G07000.1	23170036
AT3G52450.1	Zm00001d038447_P001	AT1G07000.1	23170036
AT3G52450.1	Zm00001d043015_P001	AT1G07000.1	23170036
AT3G52450.1	Zm00001d010602_P001	AT1G07000.1	23170036
AT3G52450.1	Zm00001d038447_P001	AT1G07000.1	23170036
AT3G52450.1	Zm00001d043015_P001	AT1G07000.1	23170036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG26241	Sorghum	cytosol	90.85	88.1
TraesCS2B01G314500.1	Wheat	cytosol	69.87	72.62
HORVU0Hr1G003810.1	Barley	cytosol	69.64	72.39
TraesCS2D01G296100.1	Wheat	cytosol	69.42	72.16
TraesCS2A01G298000.1	Wheat	cytosol	69.2	71.93
Zm00001d016730_P001	Maize	cytosol	59.38	61.01
GSMUA_Achr7P03220_001	Banana	cytosol	35.49	51.29
GSMUA_Achr5P01000_001	Banana	cytosol	37.72	47.61
VIT_08s0105g00190.t01	Wine grape	cytosol, plastid, vacuole	42.19	45.99
VIT_08s0105g00180.t01	Wine grape	cytosol, plastid, vacuole	42.19	45.99
Zm00001d001769_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	39.96	45.66
VIT_06s0009g00320.t01	Wine grape	cytosol	41.74	45.17
KRH22633	Soybean	cytosol, nucleus	40.4	44.91
CDX75084	Canola	cytosol	40.62	44.83
CDX84168	Canola	cytosol	40.62	44.83
KRH26691	Soybean	cytosol	38.62	44.7
Zm00001d042738_P001	Maize	cytosol	40.4	44.36
Bra005309.1-P	Field mustard	cytosol	38.17	44.19
CDY32070	Canola	cytosol	40.62	44.17
CDY40422	Canola	cytosol	40.62	44.17
Bra017278.1-P	Field mustard	cytosol	40.62	44.17
PGSC0003DMT400055045	Potato	cytosol	20.76	44.08
KRH68014	Soybean	cytosol	41.29	44.05
CDY23218	Canola	cytosol	38.84	43.94
PGSC0003DMT400050493	Potato	cytosol	39.51	43.81
KRH72176	Soybean	cytosol	40.85	43.78
Solyc01g007000.2.1	Tomato	cytosol, nucleus, vacuole	39.96	43.77
CDX95337	Canola	cytosol	39.96	43.77
CDX84587	Canola	cytosol	39.96	43.77
KRG96257	Soybean	cytosol	40.85	43.68
Solyc01g007020.2.1	Tomato	cytosol	39.73	43.63
CDX79645	Canola	cytosol	39.73	43.63
Solyc01g007030.2.1	Tomato	cytosol	20.54	43.6
PGSC0003DMT400054949	Potato	cytosol	39.51	43.6
KRH32856	Soybean	cytosol	40.85	43.57
Solyc11g068920.1.1	Tomato	cytosol	39.29	43.56
AT2G35930.1	Thale cress	cytosol	39.96	43.55
Bra023044.1-P	Field mustard	cytosol	39.73	43.52
CDX78096	Canola	cytosol	37.72	43.44
KRH35744	Soybean	cytosol	40.62	43.44
KRG96268	Soybean	cytosol	40.62	43.44
CDY59599	Canola	cytosol	39.29	43.03
PGSC0003DMT400055049	Potato	cytosol, nucleus, plasma membrane	38.84	42.86
PGSC0003DMT400055051	Potato	cytosol	37.5	42.64
PGSC0003DMT400055050	Potato	cytosol	37.28	42.6
Bra033430.1-P	Field mustard	cytosol	40.18	42.45
Solyc01g007010.2.1	Tomato	cytosol	38.62	42.4
KRH25324	Soybean	cytosol	33.93	41.87
Bra006925.1-P	Field mustard	cytosol	40.18	41.38
PGSC0003DMT400054948	Potato	cytosol	26.12	41.05
Bra012803.1-P	Field mustard	cytosol	38.62	40.9
Solyc01g009330.1.1	Tomato	cytosol	38.84	40.85
Solyc01g007040.2.1	Tomato	cytosol, nucleus, vacuole	16.29	40.78
AT3G52450.1	Thale cress	cytosol	39.29	40.46
PGSC0003DMT400054947	Potato	cytosol	26.56	39.4
Zm00001d019807_P001	Maize	extracellular	8.26	39.36
PGSC0003DMT400038197	Potato	cytosol	38.17	37.67
Zm00001d050712_P001	Maize	extracellular, plastid	30.13	33.01
Zm00001d016764_P001	Maize	extracellular	30.13	32.3
Zm00001d026040_P001	Maize	cytosol	27.68	30.32
Zm00001d002498_P001	Maize	cytosol	27.9	30.12
Zm00001d044734_P001	Maize	mitochondrion	29.02	29.41
GSMUA_Achr9P29630_001	Banana	cytosol	39.51	28.64
Zm00001d017671_P001	Maize	cytosol	26.12	27.53
Zm00001d003624_P001	Maize	cytosol	24.33	27.25
Zm00001d017976_P001	Maize	mitochondrion	27.46	27.21
Zm00001d025379_P001	Maize	cytosol, mitochondrion, peroxisome, plastid	26.34	26.58
Zm00001d028374_P001	Maize	mitochondrion	25.22	25.28
Zm00001d050689_P001	Maize	cytosol	24.11	25.17
Zm00001d016719_P001	Maize	cytosol	24.11	25.17
Zm00001d030251_P001	Maize	cytosol	23.88	24.1
Zm00001d028294_P001	Maize	cytosol	24.55	23.97
Zm00001d048008_P001	Maize	cytosol	24.11	23.33
Zm00001d038280_P001	Maize	cytosol	22.77	22.57
Zm00001d000044_P001	Maize	cytosol	11.61	22.51
Zm00001d023480_P001	Maize	cytosol	27.46	22.0

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:100274458	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold
UniProt:B4G159	EMBL:BT043097	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005488
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740
GO:GO:0016874	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989	InterPro:IPR013083	ProteinID:ONM17658.1
PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF49	SMART:SM00504	SUPFAM:SSF48371
SUPFAM:SSF57850	UniParc:UPI00017B7E2E	InterPro:Ubox_domain	EnsemblPlantsGene:Zm00001d003745	EnsemblPlants:Zm00001d003745_P001	EnsemblPlants:Zm00001d003745_T001
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

E3 ubiquitin-protein ligase PUB23

Coordinates

chr2:+:57301190..57302536

Molecular Weight (calculated)

47763.0 Da

IEP (calculated)

8.451

GRAVY (calculated)

0.057

Length

448 amino acids

Sequence
(BLAST)

001: MERARARAPA LALAPVEVPK FFVCPISLEV MRDPVTLSSG ITYDRDSIER WLFTDGHGDC PVTKLPLGAD DLEPTPNHTL RRLIQSWCAA HAVERFPTPR
101: PPVDADRVAA IVGCAKKGGQ QEVLAALREL ADIIGESDRN RRCVEGVPEA VEFLVSVVKK HAAGTSSSKP LGGCRSQEEP MCGVPDSPKA CSPEEAALSI
201: LHSLKLSEAS LKRALESSDG FVDTLASVLR WPPNYRARTY AMHLLKAALS AMQPSQLSSA STDLVEGVVR VVADRTLSPK AIKVALHVLC RLCPWGRNRV
301: KAVEAGAVAA VVELLLNVGC GCGGSNGKRA VELAVVAIDH LCGCAEGRLE LVAHPAGLAV VARAATRLSP TATESAVRAL HAVARHSATP AVLQEMLAVG
401: VVARLLYLVQ AGASGERPRE RAREMLKMHA RVWRGSPCLA SHMASYPC

Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)

001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C

Arabidopsis Description

PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.