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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc03g123870.2.1
Solyc08g066070.1.1 golgi
Solyc08g078700.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G35930.1 Solyc08g078700.2.1 AT4G25200.1 21798944
AT3G52450.1 Solyc08g066070.1.1 AT1G07000.1 23170036
AT3G52450.1 Solyc08g066070.1.1 AT1G07000.1 23170036
AT3G52450.1 Solyc03g123870.2.1 AT5G49830.2 23170036
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400054947 Potato cytosol 94.79 66.23
Solyc01g007010.2.1 Tomato cytosol 95.26 49.26
Solyc01g007000.2.1 Tomato cytosol, nucleus, vacuole 94.31 48.66
Solyc01g007020.2.1 Tomato cytosol 93.36 48.28
VIT_08s0105g00190.t01 Wine grape cytosol, plastid, vacuole 66.82 34.31
VIT_08s0105g00180.t01 Wine grape cytosol, plastid, vacuole 66.82 34.31
KRH68014 Soybean cytosol 67.3 33.81
KRG96257 Soybean cytosol 65.4 32.94
KRH35744 Soybean cytosol 65.4 32.94
KRG96268 Soybean cytosol 64.93 32.7
KRH32856 Soybean cytosol 62.56 31.43
CDX78096 Canola cytosol 57.82 31.36
GSMUA_Achr7P03220_001 Banana cytosol 45.5 30.97
KRH72176 Soybean cytosol 61.14 30.86
Bra005309.1-P Field mustard cytosol 54.98 29.97
CDX95337 Canola cytosol 57.82 29.83
CDY59599 Canola cytosol 57.82 29.83
CDY23218 Canola cytosol 55.45 29.55
AT2G35930.1 Thale cress cytosol 56.4 28.95
CDX79645 Canola cytosol 55.45 28.68
CDY40422 Canola cytosol 55.92 28.64
CDY32070 Canola cytosol 55.92 28.64
Bra017278.1-P Field mustard cytosol 55.92 28.64
Solyc01g009330.1.1 Tomato cytosol 57.82 28.64
CDX84587 Canola cytosol 55.45 28.61
Bra023044.1-P Field mustard cytosol 55.45 28.61
CDX84168 Canola cytosol 54.98 28.57
CDX75084 Canola cytosol 54.98 28.57
GSMUA_Achr5P01000_001 Banana cytosol 47.87 28.45
Bra006925.1-P Field mustard cytosol 57.82 28.05
Bra012803.1-P Field mustard cytosol 55.92 27.9
Bra033430.1-P Field mustard cytosol 55.45 27.59
AT3G52450.1 Thale cress cytosol 56.4 27.36
GSMUA_Achr10P... Banana cytosol 46.92 27.12
Solyc11g068920.1.1 Tomato cytosol 51.66 26.98
GSMUA_Achr11P... Banana cytosol 45.02 25.47
OQU85086 Sorghum cytosol 51.18 25.29
Os04t0686000-01 Rice cytosol 49.29 25.18
Os01t0865700-00 Rice plastid 48.34 25.06
TraesCS3B01G409400.1 Wheat cytosol 49.29 24.94
TraesCS3A01G376900.1 Wheat cytosol 49.29 24.88
TraesCS3D01G370000.1 Wheat cytosol 49.29 24.88
EES06927 Sorghum cytosol 49.76 24.76
Solyc01g009320.1.1 Tomato cytosol 48.82 24.64
TraesCS6D01G367100.1 Wheat cytosol 48.82 24.52
TraesCS6B01G421400.1 Wheat cytosol 48.82 24.52
GSMUA_Achr8P30400_001 Banana cytosol 42.65 24.52
EES03937 Sorghum plastid 47.39 24.51
HORVU3Hr1G083500.1 Barley cytosol 47.87 24.46
TraesCS6A01G382300.1 Wheat cytosol 48.82 24.41
TraesCS6D01G367600.1 Wheat cytosol 48.82 24.35
TraesCS6B01G421900.1 Wheat cytosol 48.34 24.29
TraesCS6B01G420600.1 Wheat cytosol 48.34 24.29
TraesCS6A01G382800.1 Wheat cytosol 48.34 24.17
Zm00001d042738_P001 Maize cytosol 46.45 24.02
EES13136 Sorghum cytosol 46.92 23.24
Zm00001d016730_P001 Maize cytosol 47.87 23.17
Os02t0539200-01 Rice cytosol 48.34 23.08
Solyc06g074140.1.1 Tomato cytosol 45.5 22.86
HORVU6Hr1G089560.1 Barley plastid 48.82 22.84
HORVU6Hr1G089590.1 Barley plastid 48.82 22.79
TraesCS2A01G298000.1 Wheat cytosol 45.97 22.51
TraesCS2B01G314500.1 Wheat cytosol 45.97 22.51
HORVU0Hr1G003810.1 Barley cytosol 45.5 22.27
TraesCS2D01G296100.1 Wheat cytosol 45.5 22.27
HORVU2Hr1G123050.1 Barley cytosol 34.6 21.73
TraesCSU01G036400.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 43.6 21.55
TraesCS2B01G601300.1 Wheat cytosol 43.6 21.55
TraesCS2D01G594700.1 Wheat cytosol, endoplasmic reticulum, plasma membrane 43.13 21.31
Solyc11g068940.1.1 Tomato cytosol 42.18 21.04
Zm00001d001769_P001 Maize cytosol, endoplasmic reticulum, peroxisome 38.86 20.92
Zm00001d003745_P001 Maize nucleus 43.6 20.54
KXG26241 Sorghum cytosol 44.55 20.35
TraesCS6D01G167300.1 Wheat cytosol 38.39 18.71
TraesCS6B01G209000.1 Wheat cytosol 37.44 18.68
TraesCS6A01G176800.1 Wheat cytosol 37.44 18.29
HORVU6Hr1G034250.1 Barley cytosol, nucleus, peroxisome 36.97 18.01
Solyc01g007050.1.1 Tomato cytosol 35.07 17.58
Solyc01g080920.2.1 Tomato cytosol 31.75 16.38
KXG23010 Sorghum cytosol 35.07 16.3
Os12t0161100-00 Rice cytosol 33.18 15.95
GSMUA_Achr9P29630_001 Banana cytosol 46.45 15.86
Solyc11g006030.1.1 Tomato cytosol 31.75 15.58
Solyc04g008100.1.1 Tomato cytosol 30.81 14.71
Solyc11g005700.1.1 Tomato cytosol 24.17 12.14
Solyc01g107980.2.1 Tomato cytosol 23.7 12.05
Solyc01g005160.2.1 Tomato mitochondrion 25.59 12.0
Zm00001d023480_P001 Maize cytosol 28.44 10.73
Solyc04g077610.2.1 Tomato cytosol 18.96 9.55
Solyc05g056500.1.1 Tomato cytosol 18.01 9.48
Solyc04g071030.1.1 Tomato cytosol 18.96 9.37
Solyc01g007040.2.1 Tomato cytosol, nucleus, vacuole 1.9 2.23
HORVU2Hr1G123130.1 Barley cytosol 0.0 0.0
Protein Annotations
EnsemblPlants:Solyc01g007030.2.1EnsemblPlantsGene:Solyc01g007030.2Gene3D:1.25.10.10GO:GO:0003674GO:GO:0005488InterPro:ARM-like
InterPro:ARM-type_foldInterPro:IPR011989PANTHER:PTHR22849PANTHER:PTHR22849:SF54SUPFAM:SSF48371UniParc:UPI00027626EB
UniProt:K4ASR9MapMan:35.1::::
Description
No Description!
Coordinates
chr1:-:1583240..1584704
Molecular Weight (calculated)
23395.0 Da
IEP (calculated)
9.775
GRAVY (calculated)
0.154
Length
211 amino acids
Sequence
(BLAST)
001: MQHGSYESRA YVVMLMKDMF EVSTPTPLLS LKQEFFTQVV QVLRDEISQK ATKASLQVLV HACPFGRNRV KAAEAGAIRV LVDLLLDSSE KRVCELMLIL
101: LDQICQSAEG RAELLNHPGG LAIVSKKILR VSKVGSERAI KILHSISKFS STPSVVQEML SLGVVAKLCL VLQVDCGSKA KERAREILKF HAKAWRNSPC
201: IPMNLLSSYP F
Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)
001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
Arabidopsis Description
PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.