Factsheet for Solyc01g007020.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g123870.2.1
Solyc08g066070.1.1	golgi
Solyc08g078700.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G35930.1	Solyc08g078700.2.1	AT4G25200.1	21798944
AT3G52450.1	Solyc08g066070.1.1	AT1G07000.1	23170036
AT3G52450.1	Solyc08g066070.1.1	AT1G07000.1	23170036
AT3G52450.1	Solyc03g123870.2.1	AT5G49830.2	23170036

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g007030.2.1	Tomato	cytosol	48.28	93.36
PGSC0003DMT400055045	Potato	cytosol	48.04	92.89
PGSC0003DMT400054949	Potato	cytosol	92.4	92.86
Solyc01g007010.2.1	Tomato	cytosol	92.4	92.4
Solyc01g007000.2.1	Tomato	cytosol, nucleus, vacuole	92.16	91.93
PGSC0003DMT400055049	Potato	cytosol, nucleus, plasma membrane	91.42	91.87
PGSC0003DMT400055050	Potato	cytosol	88.24	91.84
PGSC0003DMT400054948	Potato	cytosol	63.48	90.88
PGSC0003DMT400055051	Potato	cytosol	87.75	90.86
Solyc01g007040.2.1	Tomato	cytosol, nucleus, vacuole	36.27	82.68
VIT_08s0105g00190.t01	Wine grape	cytosol, plastid, vacuole	65.93	65.45
VIT_08s0105g00180.t01	Wine grape	cytosol, plastid, vacuole	65.69	65.21
KRH35744	Soybean	cytosol	65.93	64.2
KRH68014	Soybean	cytosol	65.69	63.81
KRG96257	Soybean	cytosol	64.22	62.53
KRG96268	Soybean	cytosol	63.97	62.29
KRH32856	Soybean	cytosol	60.54	58.81
KRH72176	Soybean	cytosol	59.56	58.13
CDY59599	Canola	cytosol	56.62	56.48
CDX78096	Canola	cytosol	53.68	56.3
CDX84168	Canola	cytosol	55.88	56.16
CDX95337	Canola	cytosol	56.13	55.99
CDX75084	Canola	cytosol	55.39	55.66
CDX79645	Canola	cytosol	55.39	55.39
Bra005309.1-P	Field mustard	cytosol	52.21	55.04
GSMUA_Achr11P...	Banana	cytosol	50.25	54.96
Bra017278.1-P	Field mustard	cytosol	55.39	54.85
CDY40422	Canola	cytosol	55.39	54.85
CDY32070	Canola	cytosol	55.39	54.85
Bra023044.1-P	Field mustard	cytosol	54.9	54.77
AT2G35930.1	Thale cress	cytosol	55.15	54.74
HORVU2Hr1G123130.1	Barley	cytosol	6.13	54.35
CDX84587	Canola	cytosol	54.41	54.28
CDY23218	Canola	cytosol	52.45	54.04
Solyc01g009330.1.1	Tomato	cytosol	56.13	53.76
Bra012803.1-P	Field mustard	cytosol	55.64	53.66
Bra006925.1-P	Field mustard	cytosol	56.62	53.1
AT3G52450.1	Thale cress	cytosol	56.37	52.87
GSMUA_Achr7P03220_001	Banana	cytosol	39.95	52.58
Bra033430.1-P	Field mustard	cytosol	54.41	52.36
GSMUA_Achr8P30400_001	Banana	cytosol	46.81	52.04
GSMUA_Achr10P...	Banana	cytosol	46.08	51.51
Solyc11g068920.1.1	Tomato	cytosol	50.98	51.49
GSMUA_Achr5P01000_001	Banana	cytosol	41.67	47.89
OQU85086	Sorghum	cytosol	46.32	44.26
TraesCS6D01G367100.1	Wheat	cytosol	45.34	44.05
Solyc01g009320.1.1	Tomato	cytosol	45.1	44.02
TraesCS6D01G367600.1	Wheat	cytosol	45.59	43.97
Os04t0686000-01	Rice	cytosol	44.36	43.83
EES06927	Sorghum	cytosol	45.34	43.63
TraesCS6B01G421400.1	Wheat	cytosol	44.61	43.33
TraesCS6A01G382300.1	Wheat	cytosol	44.61	43.13
TraesCS6A01G382800.1	Wheat	cytosol	44.61	43.13
TraesCS6B01G421900.1	Wheat	cytosol	44.36	43.1
TraesCS6B01G420600.1	Wheat	cytosol	44.36	43.1
Os02t0539200-01	Rice	cytosol	46.57	42.99
TraesCS2B01G314500.1	Wheat	cytosol	45.34	42.92
HORVU0Hr1G003810.1	Barley	cytosol	45.1	42.69
TraesCS2D01G296100.1	Wheat	cytosol	44.85	42.46
TraesCS2A01G298000.1	Wheat	cytosol	44.85	42.46
Os01t0865700-00	Rice	plastid	41.42	41.52
EES13136	Sorghum	cytosol	42.89	41.08
Zm00001d016730_P001	Maize	cytosol	43.63	40.83
Solyc06g074140.1.1	Tomato	cytosol	41.91	40.71
HORVU6Hr1G089560.1	Barley	plastid	44.36	40.13
HORVU6Hr1G089590.1	Barley	plastid	44.36	40.04
TraesCS3D01G370000.1	Wheat	cytosol	40.93	39.95
TraesCS3A01G376900.1	Wheat	cytosol	40.93	39.95
TraesCS3B01G409400.1	Wheat	cytosol	40.69	39.81
Zm00001d001769_P001	Maize	cytosol, endoplasmic reticulum, peroxisome	38.24	39.8
Zm00001d003745_P001	Maize	nucleus	43.63	39.73
HORVU3Hr1G083500.1	Barley	cytosol	39.95	39.47
EES03937	Sorghum	plastid	39.46	39.46
KXG26241	Sorghum	cytosol	44.36	39.18
Zm00001d042738_P001	Maize	cytosol	38.97	38.97
Solyc11g068940.1.1	Tomato	cytosol	39.71	38.3
Solyc01g007050.1.1	Tomato	cytosol	36.76	35.63
TraesCSU01G036400.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	35.29	33.72
TraesCS2B01G601300.1	Wheat	cytosol	35.29	33.72
TraesCS2D01G594700.1	Wheat	cytosol, endoplasmic reticulum, plasma membrane	35.05	33.49
Solyc01g080920.2.1	Tomato	cytosol	31.13	31.05
TraesCS6B01G209000.1	Wheat	cytosol	31.86	30.73
Solyc11g006030.1.1	Tomato	cytosol	32.35	30.7
HORVU2Hr1G123050.1	Barley	cytosol	25.25	30.65
TraesCS6D01G167300.1	Wheat	cytosol	31.86	30.02
Solyc04g008100.1.1	Tomato	cytosol	32.35	29.86
TraesCS6A01G176800.1	Wheat	cytosol	31.62	29.86
HORVU6Hr1G034250.1	Barley	cytosol, nucleus, peroxisome	31.62	29.79
GSMUA_Achr9P29630_001	Banana	cytosol	43.87	28.96
Solyc01g107980.2.1	Tomato	cytosol	28.43	27.95
Solyc01g005160.2.1	Tomato	mitochondrion	30.64	27.78
KXG23010	Sorghum	cytosol	29.9	26.87
Os12t0161100-00	Rice	cytosol	28.68	26.65
Solyc04g077610.2.1	Tomato	cytosol	24.75	24.11
Solyc11g005700.1.1	Tomato	cytosol	24.75	24.05
Solyc05g056500.1.1	Tomato	cytosol	20.34	20.7
Solyc04g071030.1.1	Tomato	cytosol	21.32	20.37
Zm00001d023480_P001	Maize	cytosol	27.45	20.04

Protein Annotations

Gene3D:1.25.10.10	Gene3D:3.30.40.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0005488	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR011989
InterPro:IPR013083	UniProt:K4ASR8	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR22849	PANTHER:PTHR22849:SF54
SMART:SM00504	SUPFAM:SSF48371	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc01g007020.2	EnsemblPlants:Solyc01g007020.2.1	UniParc:UPI00027626EA
InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	:	:	:	:

Description

RING-type E3 ubiquitin transferase [Source:UniProtKB/TrEMBL;Acc:K4ASR8]

Coordinates

chr1:-:1576697..1578207

Molecular Weight (calculated)

45863.5 Da

IEP (calculated)

9.233

GRAVY (calculated)

-0.060

Length

408 amino acids

Sequence
(BLAST)

001: MEEIQVPPYF ICPISLEIMK DPVTISTGMT YDRENIEKWI FTAKNNTCPA TKQSLTCIEL TPNVTLRRFI QSWCTLNESH GIERFPTPKP PVSKPQIIKL
101: LKEAKSPKLQ MKSLKRLRSI ASENDANKRC MESAGAMEFL ASIINKNVNE VFEDEEGFMS IKDEALSILY QLKLSENGLK SLISIGNGEF IESLTRVMQH
201: GSYESRAYAV MLMKNMFEVS TPTPLLSLKK EFFIQVVQVL KDEISQKAKK ASLQVLVNVC PFGRNRVKAA EVGTIRVLVD LLLDSYEKRV CELMLILLDQ
301: LCQSAEGRAE LLNHPGGLAI VSKKILRVSK VGSERAIKIL HSISKFSSTP SVVQEMLSLG VVAKLCLVLQ VDCGSKAKER AREILKFHAK AWRNSPCIPN
401: YLLSSYPF

Best Arabidopsis Sequence Match ( AT2G35930.1 )
(BLAST)

001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C

Arabidopsis Description

PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.