Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400012249 | |
| PGSC0003DMT400023748 | |
| PGSC0003DMT400065456 | golgi |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400054949 | Potato | cytosol | 94.39 | 66.26 |
| PGSC0003DMT400055049 | Potato | cytosol, nucleus, plasma membrane | 94.39 | 66.26 |
| Solyc01g007000.2.1 | Tomato | cytosol, nucleus, vacuole | 92.63 | 64.55 |
| PGSC0003DMT400055050 | Potato | cytosol | 88.42 | 64.29 |
| Solyc01g007010.2.1 | Tomato | cytosol | 91.93 | 64.22 |
| PGSC0003DMT400055051 | Potato | cytosol | 88.77 | 64.21 |
| Solyc01g007020.2.1 | Tomato | cytosol | 90.88 | 63.48 |
| HORVU2Hr1G123130.1 | Barley | cytosol | 9.12 | 56.52 |
| PGSC0003DMT400054947 | Potato | cytosol | 58.95 | 55.63 |
| VIT_08s0105g00190.t01 | Wine grape | cytosol, plastid, vacuole | 61.75 | 42.82 |
| KRH35744 | Soybean | cytosol | 62.81 | 42.72 |
| VIT_08s0105g00180.t01 | Wine grape | cytosol, plastid, vacuole | 61.4 | 42.58 |
| KRH68014 | Soybean | cytosol | 60.7 | 41.19 |
| KRG96257 | Soybean | cytosol | 60.35 | 41.05 |
| KRG96268 | Soybean | cytosol | 60.0 | 40.81 |
| KRH32856 | Soybean | cytosol | 58.25 | 39.52 |
| KRH72176 | Soybean | cytosol | 57.19 | 39.0 |
| CDX84168 | Canola | cytosol | 55.44 | 38.92 |
| PGSC0003DMT400055045 | Potato | cytosol | 28.77 | 38.86 |
| CDY32070 | Canola | cytosol | 56.14 | 38.84 |
| Bra023044.1-P | Field mustard | cytosol | 55.44 | 38.63 |
| Bra017278.1-P | Field mustard | cytosol | 55.79 | 38.59 |
| CDY40422 | Canola | cytosol | 55.79 | 38.59 |
| CDX79645 | Canola | cytosol | 55.09 | 38.48 |
| CDX75084 | Canola | cytosol | 54.39 | 38.18 |
| CDX84587 | Canola | cytosol | 54.74 | 38.14 |
| CDY59599 | Canola | cytosol | 54.04 | 37.65 |
| AT2G35930.1 | Thale cress | cytosol | 53.68 | 37.23 |
| CDX95337 | Canola | cytosol | 53.33 | 37.16 |
| Bra005309.1-P | Field mustard | cytosol | 50.18 | 36.95 |
| CDX78096 | Canola | cytosol | 49.82 | 36.5 |
| GSMUA_Achr11P... | Banana | cytosol | 47.72 | 36.46 |
| Bra012803.1-P | Field mustard | cytosol | 52.98 | 35.7 |
| Bra006925.1-P | Field mustard | cytosol | 54.04 | 35.4 |
| CDY23218 | Canola | cytosol | 48.42 | 34.85 |
| AT3G52450.1 | Thale cress | cytosol | 52.98 | 34.71 |
| GSMUA_Achr8P30400_001 | Banana | cytosol | 44.56 | 34.6 |
| Bra033430.1-P | Field mustard | cytosol | 51.23 | 34.43 |
| GSMUA_Achr10P... | Banana | cytosol | 42.11 | 32.88 |
| PGSC0003DMT400038197 | Potato | cytosol | 52.28 | 32.82 |
| PGSC0003DMT400050493 | Potato | cytosol | 46.32 | 32.67 |
| GSMUA_Achr7P03220_001 | Banana | cytosol | 34.39 | 31.61 |
| GSMUA_Achr5P01000_001 | Banana | cytosol | 37.19 | 29.86 |
| TraesCS6D01G367100.1 | Wheat | cytosol | 43.51 | 29.52 |
| TraesCS6D01G367600.1 | Wheat | cytosol | 43.16 | 29.08 |
| Zm00001d001769_P001 | Maize | cytosol, endoplasmic reticulum, peroxisome | 39.65 | 28.83 |
| Os02t0539200-01 | Rice | cytosol | 44.56 | 28.73 |
| TraesCS6A01G382800.1 | Wheat | cytosol | 42.46 | 28.67 |
| PGSC0003DMT400038196 | Potato | cytosol | 41.75 | 28.47 |
| TraesCS6B01G421900.1 | Wheat | cytosol | 41.75 | 28.33 |
| TraesCS6B01G421400.1 | Wheat | cytosol | 41.75 | 28.33 |
| TraesCS6B01G420600.1 | Wheat | cytosol | 41.75 | 28.33 |
| Os04t0686000-01 | Rice | cytosol | 41.05 | 28.33 |
| TraesCS6A01G382300.1 | Wheat | cytosol | 41.75 | 28.2 |
| OQU85086 | Sorghum | cytosol | 42.11 | 28.1 |
| HORVU0Hr1G003810.1 | Barley | cytosol | 42.46 | 28.07 |
| TraesCS2B01G314500.1 | Wheat | cytosol | 42.46 | 28.07 |
| EES06927 | Sorghum | cytosol | 41.75 | 28.07 |
| TraesCS2D01G296100.1 | Wheat | cytosol | 42.11 | 27.84 |
| TraesCS2A01G298000.1 | Wheat | cytosol | 41.75 | 27.61 |
| EES13136 | Sorghum | cytosol | 40.35 | 27.0 |
| HORVU6Hr1G089560.1 | Barley | plastid | 41.75 | 26.39 |
| HORVU6Hr1G089590.1 | Barley | plastid | 41.75 | 26.33 |
| Zm00001d016730_P001 | Maize | cytosol | 40.0 | 26.15 |
| Zm00001d003745_P001 | Maize | nucleus | 41.05 | 26.12 |
| KXG26241 | Sorghum | cytosol | 42.11 | 25.97 |
| Os01t0865700-00 | Rice | plastid | 36.14 | 25.31 |
| TraesCS3B01G409400.1 | Wheat | cytosol | 35.44 | 24.22 |
| TraesCS3D01G370000.1 | Wheat | cytosol | 35.44 | 24.16 |
| PGSC0003DMT400015179 | Potato | cytosol | 34.04 | 24.07 |
| HORVU3Hr1G083500.1 | Barley | cytosol | 34.74 | 23.97 |
| TraesCS3A01G376900.1 | Wheat | cytosol | 35.09 | 23.92 |
| EES03937 | Sorghum | plastid | 33.33 | 23.28 |
| PGSC0003DMT400054946 | Potato | cytosol | 34.39 | 23.28 |
| Zm00001d042738_P001 | Maize | cytosol | 32.28 | 22.55 |
| TraesCS2B01G601300.1 | Wheat | cytosol | 32.63 | 21.78 |
| TraesCS2D01G594700.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 32.63 | 21.78 |
| TraesCSU01G036400.1 | Wheat | cytosol, endoplasmic reticulum, plasma membrane | 32.63 | 21.78 |
| PGSC0003DMT400004594 | Potato | cytosol | 29.47 | 20.64 |
| PGSC0003DMT400075778 | Potato | mitochondrion | 31.93 | 20.59 |
| HORVU2Hr1G123050.1 | Barley | cytosol | 24.21 | 20.54 |
| PGSC0003DMT400066588 | Potato | cytosol | 29.82 | 20.48 |
| PGSC0003DMT400073836 | Potato | cytosol | 29.47 | 20.05 |
| PGSC0003DMT400058621 | Potato | cytosol, mitochondrion | 31.23 | 19.73 |
| TraesCS6B01G209000.1 | Wheat | cytosol | 27.37 | 18.44 |
| TraesCS6A01G176800.1 | Wheat | cytosol | 27.72 | 18.29 |
| HORVU6Hr1G034250.1 | Barley | cytosol, nucleus, peroxisome | 27.72 | 18.24 |
| TraesCS6D01G167300.1 | Wheat | cytosol | 27.37 | 18.01 |
| GSMUA_Achr9P29630_001 | Banana | cytosol | 37.89 | 17.48 |
| KXG23010 | Sorghum | cytosol | 26.67 | 16.74 |
| Os12t0161100-00 | Rice | cytosol | 25.26 | 16.4 |
| PGSC0003DMT400012566 | Potato | cytosol | 25.26 | 16.04 |
| PGSC0003DMT400065698 | Potato | cytosol | 23.16 | 15.71 |
| PGSC0003DMT400060272 | Potato | cytosol | 21.05 | 14.85 |
| PGSC0003DMT400002079 | Potato | cytosol | 19.3 | 13.16 |
| Zm00001d023480_P001 | Maize | cytosol | 23.51 | 11.99 |
Protein Annotations
| Gene3D:1.25.10.10 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:ARM-like | InterPro:ARM-type_fold | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004842 | GO:GO:0005488 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR003613 | InterPro:IPR011989 |
| InterPro:IPR013083 | UniProt:M1BX41 | PFAM:PF04564 | EnsemblPlantsGene:PGSC0003DMG400021326 | PGSC:PGSC0003DMG400021326 | EnsemblPlants:PGSC0003DMT400054948 |
| PFscan:PS51698 | PANTHER:PTHR22849 | PANTHER:PTHR22849:SF54 | SMART:SM00504 | SUPFAM:SSF48371 | SUPFAM:SSF57850 |
| UniParc:UPI0002958CDB | InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD | : | : | : |
Description
U-box protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021326]
Coordinates
chr1:-:2917019..2918281
Molecular Weight (calculated)
32094.2 Da
IEP (calculated)
8.576
GRAVY (calculated)
-0.164
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEIQVPPYF ICPISLEMMK DPVTISTGIT YDRENIEKWI FSAKNNTCPA TKQSLTCIEL TPNVTLRRFI QSWCTINASH GIERFPTPKP PVSKPQIIKL
101: LKEAKSPKMQ MKSLKRLRSI ASENDANKRC MESAGAMEFL ASIINNSNEV FEEEDGFMST KDEALSILYQ LKLSENGLRS LIMSGNGEFI ESLTRVMQHG
201: SYESRAYAVM LMKDMFEVST PTLLLSLKQE FFTQVVQVLK NEISQKAMKA SLQVLVNACP FGRNRVKAAE AGAIRVLVDS SARFI
101: LKEAKSPKMQ MKSLKRLRSI ASENDANKRC MESAGAMEFL ASIINNSNEV FEEEDGFMST KDEALSILYQ LKLSENGLRS LIMSGNGEFI ESLTRVMQHG
201: SYESRAYAVM LMKDMFEVST PTLLLSLKQE FFTQVVQVLK NEISQKAMKA SLQVLVNACP FGRNRVKAAE AGAIRVLVDS SARFI
001: MSGGIMDEEI EIPPFFLCPI SLEIMKDPVI VSTGITYDRD SIEKWLFAGK KNSCPVTKQD ITDADLTPNH TLRRLIQSWC TLNASYGVER IPTPRPPICK
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
101: SEIEKLIRDS ASSHENQVKC LKRLRQIVSE NATNKRCLEA AGVPEFLANI VSNDSENGSL TDEALNLLYH LETSETVLKN LLNNKKDNNI VKSLTKIMQR
201: GMYESRVYAT LLLKNILEVA DPMQSMTLKP EVFTEVVQIL DDRISQKATK AAMHILVNIC PWGRNRHKAV EAGVISVIIE LLMDESFTSE RRGPEMAMVV
301: LDLLCQCAEG RAEFLNHGAA IAVVCKKILR VSQTASDRAV RVLLSVGRFC ATPALLHEML QLGVVAKLCL VLQVSCGGKT KEKAKELLKL HARVWKDSPC
401: LPKNMILAYP C
Arabidopsis Description
PUB23E3 ubiquitin-protein ligase PUB23 [Source:UniProtKB/Swiss-Prot;Acc:Q84TG3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.